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Detail information of GWHGAAZE013012
Functional Annotation
Database
Orthologs
E value
Annotation
Nr
XP_006429390.1
0
hypothetical protein CICLE_v10011517mg [Citrus clementina]
Swissprot
tr|Q9M028|LMBD2_ARATH
0
LIMR family protein At5g01460
trEMBL
tr|V4SUI2|V4SUI2_9ROSI
0
Uncharacterized protein {ECO:0000313|EMBL:ESR42630.1}
TAIR10
AT5G01460.1
0
LMBR1-like membrane protein
Location And Transcript Sequence
(JBrowse)
Scaffold
Type
Start
End
Strand
GWHAAZE00000003
gene
95347204
95355647
+
GWHAAZE00000003
mRNA
95347204
95355647
+
GWHAAZE00000003
exon
95347204
95347595
+
GWHAAZE00000003
exon
95348031
95348116
+
GWHAAZE00000003
exon
95349330
95349445
+
GWHAAZE00000003
exon
95349605
95349715
+
GWHAAZE00000003
exon
95350044
95350142
+
GWHAAZE00000003
exon
95350285
95350407
+
GWHAAZE00000003
exon
95350900
95350962
+
GWHAAZE00000003
exon
95351069
95351133
+
GWHAAZE00000003
exon
95352279
95352388
+
GWHAAZE00000003
exon
95352686
95352800
+
GWHAAZE00000003
exon
95353414
95353479
+
GWHAAZE00000003
exon
95354146
95354256
+
GWHAAZE00000003
exon
95354338
95354404
+
GWHAAZE00000003
exon
95355125
95355647
+
GWHAAZE00000003
CDS
95347204
95347595
+
GWHAAZE00000003
CDS
95348031
95348116
+
GWHAAZE00000003
CDS
95349330
95349445
+
GWHAAZE00000003
CDS
95349605
95349715
+
GWHAAZE00000003
CDS
95350044
95350142
+
GWHAAZE00000003
CDS
95350285
95350407
+
GWHAAZE00000003
CDS
95350900
95350962
+
GWHAAZE00000003
CDS
95351069
95351133
+
GWHAAZE00000003
CDS
95352279
95352388
+
GWHAAZE00000003
CDS
95352686
95352800
+
GWHAAZE00000003
CDS
95353414
95353479
+
GWHAAZE00000003
CDS
95354146
95354256
+
GWHAAZE00000003
CDS
95354338
95354404
+
GWHAAZE00000003
CDS
95355125
95355172
+
GWHAAZE00000003
three_prime_UTR
95355173
95355647
+
Transcript Sequence
>GWHTAAZE013026 ATGGGCGATTTCAACCTCGCGCTCGTCATCGTCGCCATTGCCGTCACAATACTGGTCTTCATCTTCAATGTCTACCTCCTTATCAACTACCAGCACCCCGATGATAAGAACCAGGCATATTTCCCCAAATTCGTCGTCGTTTTGGGCCTCTCCGTTGCCTCTTTATCCATTTTGATGCTTCCGGCTGACGTGGCCAACCGGCAGGCTTGCATTCACTCGATTTATAATGGCGCTTGTAACCTAACATTGCCGATGAAGCAATTGTGGATCGCTGTTTATATTCTTGATGCGGTTTTGGTCTTCTTTGTCATTCCGTTTGCCATGTTCTTCTACGAAGGGGATGAGGACAAGTCGGTACATTTCTATGGTTTGATGATTATTTTCACTGTTCTTCCCCTTGGCAAGCGGATTAAAAGTGCTATGATGTGGGTAGTAACTACGGCCATCGTTTGTGCTCTAGTGCTTGGGATTCTATACGGGATTGTTGGAAAAGTGGACTTCACTGTTAGACACCTCTCTTCAGCAACAACTAACTTTCCAAGTACTTGGTCCTTCTCCAGTAGCCAACAATGTATTGGAAATGGTCAATACCAGTGTTCCGCGTATTCTGCTAGTGCTTCGTCAGAGACAACATGGACTATGCGCGCAAGCTTTCCAGAATATATTGTTGCTCTAGCTACCATAGCTGGATCTGTACTATTCTCAATATTTGGCGGTGTTGGCATTGCTTGTCTACCATTGGGACTTATATTTGCATTCATTAGGCGTCCAACTGCAGTTATCACTCGTTCACAGTATATCAAGGAAGCAACCGATCTAGGTAAAAAAGCTAGAGAATTAAAGAAAGCTGCCGATACACTTCTTCAAGAAGAAAGGAGTGGTTCAAAGGGTAGAAAGTTCCGTAAAAATAAGAAGGCCCTGGAAAAGGAGTTGCTTCTTCTAGAAGAAGATGTGAAGGCTTTAGAAGAGATGTACCCTCAAGGTGAACAGGCTGAGACTACTTGGGCTATGACTGTTCTTGGCTACTTGGCCAAACTTGTGCTTGGAATTTTAGGGTTGATCGTCTCAGTGGCTTGGGTTGCTCATATTGTGATATATCTACTGGTTGATCCTCCTCTTTCTCCTTTCCTGAATGCGGTATTTGTCAAGCTGGACGATGCATGGGGTCTTCTGGGTACTGCCGCGTTTGCAATCTTCTGCTTCTACCTTCTCCTTGCAGTGATTGCTGGGGCAATGATGCTTGGCTTGAGATTAGTTTTCATTACTATTCATCCAATGAAGTGGGGAGCGACGCTCATGAACTCCTTTTTGTTTAATGTGGGACTCATTCTTCTGTCCTCCATGAGTGTGATTCAGTTCTGTTCCACAGCATTTGCATACTATGCTCAAGCTACTGCTGCACAAGAAATATTTGGTCACACTTTACAATCACTTCGTGGGATTAAATATTTATACAAGTATAATGTGTTCCAAATCGCATTTATAATCCTAGCTGGGTTAACTTTTGTGTATTACATGGCATTAGGATGGAGAAGAAGAAAGCCCGCGGGAAGGTTCCAACTTTCGGAATAAAGCACGTATTGATGTGACTCTGCACCTTACTGATTCTCTTGGAATTTCTCTCTTCTAATGTTTGGATGCATATAGCCTAGTTTTGTTTAATGTTGTTTGGATAAATAGGCGGAGATATCATTCATTCATCTGAGTACAAAAATTTGATTTGCAGCAGCGGGATATATGATGCTGTGGTATGGTGACTGCGGCTGATTTTTTTCCCCACATTTATTCTTCTTTTTTTGGTATGTATTCTTTCATTTTTTGATTTAATGTCATACACTCGCTTGGGCTTGTAATATTTTTTAGTGCGCCAGGGGACCTGAGCTTCATTTGATGTAATAATATGTTTAGGCAATTGAGAACAAAGGAAAGAGCTTGTGAGTAGTATCTGGTGTGCGAATATTCATTAGTTTTTAGTTGAATTCCATTTTTTGTCTGTTTCAGTTGATTTTTCCTTATTTGAAGTTGGGAAATTGAGAATGATCTTGTT
Network for GWHGAAZE013012
Network category
Network
Top300 PCC genelist
Coexpression Positive
Network
Top300 PCC genelist
Coexpression Negative
Network
Top300 PCC genelist
Functional Module
Module ID
Function Annotation
Protein Structure
Pfam accession
Pfam name
Alignment start
Alignment end
E-value
PF04791.17
LMBR1
9
291
1.90E-45
PF04791.17
LMBR1
302
501
2.80E-30
Protein Sequence
>GWHPAAZE013019 MGDFNLALVIVAIAVTILVFIFNVYLLINYQHPDDKNQAYFPKFVVVLGLSVASLSILMLPADVANRQACIHSIYNGACNLTLPMKQLWIAVYILDAVLVFFVIPFAMFFYEGDEDKSVHFYGLMIIFTVLPLGKRIKSAMMWVVTTAIVCALVLGILYGIVGKVDFTVRHLSSATTNFPSTWSFSSSQQCIGNGQYQCSAYSASASSETTWTMRASFPEYIVALATIAGSVLFSIFGGVGIACLPLGLIFAFIRRPTAVITRSQYIKEATDLGKKARELKKAADTLLQEERSGSKGRKFRKNKKALEKELLLLEEDVKALEEMYPQGEQAETTWAMTVLGYLAKLVLGILGLIVSVAWVAHIVIYLLVDPPLSPFLNAVFVKLDDAWGLLGTAAFAIFCFYLLLAVIAGAMMLGLRLVFITIHPMKWGATLMNSFLFNVGLILLSSMSVIQFCSTAFAYYAQATAAQEIFGHTLQSLRGIKYLYKYNVFQIAFIILAGLTFVYYMALGWRRRKPAGRFQLSE
Gene family
Gene family
subfamily
--
--
KEGG pathway
KO
Enzyme
pathway
mapID
K14617
LMBRD1
Vitamin digestion and absorption
map04977
Gene Ontology
GO term
Ontology
Name
Expression pattern
Expression pattern detail
SRP
Sample
Description
TPM
SRP075780
SRR3591705
youngest leaf
1.345
SRR3591706
second leaf
0.228
SRR3591707
mature leaf
0.000
SRR3591708
Shoot apex
0.921
SRR3591709
Stem
1.470
SRR3591710
White floral bud
27.973
SRR3591711
White flower
1.854
SRR3591712
Green floral bud
28.653
SRR3591713
Yellow flower
1.260
SRP173429
SRR8316895
Juvenile bud stage
7.549
SRR8316896
Juvenile bud stage
17.503
SRR8316897
Juvenile bud stage
6.933
SRR8316894
Third green stage
6.736
SRR8316900
Third green stage
19.746
SRR8316901
Third green stage
18.849
SRR8316898
Complete white stage
0.824
SRR8316899
Complete white stage
1.952
SRR8316903
Complete white stage
1.509
SRR8316902
Silver flowering stage
0.363
SRR8316904
Silver flowering stage
0.799
SRR8316905
Silver flowering stage
0.340
SRR8316906
Gold flowering stage
0.573
SRR8316907
Gold flowering stage
0.880
SRR8316908
Gold flowering stage
0.485
SRP132670
SRR6706286
Control
8.577
SRR6706287
Light intensity 50%
9.099
SRR6706288
Light intensity 20%
8.390
CNP0000432
CNS0095592
Slightly white alabastrum(diploid) 1
24.470
CNS0095593
Slightly white alabastrum(diploid) 2
16.825
CNS0095594
Slightly white alabastrum(diploid) 3
28.564
CNS0095595
Whole white alabastrum(diploid) 2
38.227
CNS0095596
Whole white alabastrum(diploid) 3
44.250
CNS0095597
Whole white alabastrum(diploid) 4
53.653
CNS0095598
Silvery flower (diploied) 1
1.665
CNS0095599
Silvery flower (diploied) 2
4.555
CNS0095600
Silvery flower (diploied) 3
2.178
CNS0095601
Golden flower (diploid) 1
2.085
CNS0095602
Golden flower (diploid) 2
1.517
CNS0095603
Golden flower (diploid) 3
1.964
CNS0095604
Slightly white alabastrum(tetraploid) 1
42.293
CNS0095605
Slightly white alabastrum(tetraploid) 2
44.724
CNS0095606
Slightly white alabastrum(tetraploid) 3
3.079
CNS0095607
Whole white alabastrum(tetraploid) 1
63.067
CNS0095608
Whole white alabastrum(tetraploid) 2
81.471
CNS0095609
Whole white alabastrum(tetraploid) 3
34.376
CNS0095610
Silvery flower (tetraploid) 1
1.579
CNS0095611
Silvery flower (tetraploid) 2
3.833
CNS0095612
Silvery flower (tetraploid) 3
6.922
CNS0095613
Golden flower (tetraploid) 1
1.413
CNS0095614
Golden flower (tetraploid) 2
1.136
CNS0095615
Golden flower (tetraploid) 3
5.427
CRA001975
CRR073297
Stem 1
10.267
CRR073298
Stem 2
8.311
CRR073299
Stem 3
8.031
CRR073300
Leaf 1
19.757
CRR073301
Leaf 2
11.845
CRR073302
Leaf 3
9.008
CRR073303
Juvenile bud 1
13.019
CRR073304
Juvenile bud 2
10.462
CRR073305
Juvenile bud 3
2.674
CRR073306
Third green 1
7.196
CRR073307
Third green 2
7.200
CRR073308
Third green 3
6.415
CRR073309
Second white 1
1.652
CRR073310
Second white 2
1.028
CRR073311
Second white 3
1.801
CRR073312
Silver flowering 1
7.455
CRR073313
Silver flowering 2
12.115
CRR073314
Silver flowering 3
4.792
CRR073315
Gold flowering 1
6.341
CRR073316
Gold flowering 2
2.282
CRR073317
Gold flowering 3
4.454
CRR073318
Tawny withering 1
4.465
CRR073319
Tawny withering 2
5.552
CRR073320
Tawny withering 3
5.473