Detail information of GWHGAAZE013012


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006429390.10hypothetical protein CICLE_v10011517mg [Citrus clementina]
Swissprottr|Q9M028|LMBD2_ARATH0LIMR family protein At5g01460
trEMBLtr|V4SUI2|V4SUI2_9ROSI0Uncharacterized protein {ECO:0000313|EMBL:ESR42630.1}
TAIR10AT5G01460.10LMBR1-like membrane protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene9534720495355647+
GWHAAZE00000003mRNA9534720495355647+
GWHAAZE00000003exon9534720495347595+
GWHAAZE00000003exon9534803195348116+
GWHAAZE00000003exon9534933095349445+
GWHAAZE00000003exon9534960595349715+
GWHAAZE00000003exon9535004495350142+
GWHAAZE00000003exon9535028595350407+
GWHAAZE00000003exon9535090095350962+
GWHAAZE00000003exon9535106995351133+
GWHAAZE00000003exon9535227995352388+
GWHAAZE00000003exon9535268695352800+
GWHAAZE00000003exon9535341495353479+
GWHAAZE00000003exon9535414695354256+
GWHAAZE00000003exon9535433895354404+
GWHAAZE00000003exon9535512595355647+
GWHAAZE00000003CDS9534720495347595+
GWHAAZE00000003CDS9534803195348116+
GWHAAZE00000003CDS9534933095349445+
GWHAAZE00000003CDS9534960595349715+
GWHAAZE00000003CDS9535004495350142+
GWHAAZE00000003CDS9535028595350407+
GWHAAZE00000003CDS9535090095350962+
GWHAAZE00000003CDS9535106995351133+
GWHAAZE00000003CDS9535227995352388+
GWHAAZE00000003CDS9535268695352800+
GWHAAZE00000003CDS9535341495353479+
GWHAAZE00000003CDS9535414695354256+
GWHAAZE00000003CDS9535433895354404+
GWHAAZE00000003CDS9535512595355172+
GWHAAZE00000003three_prime_UTR9535517395355647+
Transcript Sequence

Network for GWHGAAZE013012

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04791.17LMBR192911.90E-45
PF04791.17LMBR13025012.80E-30
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K14617LMBRD1 Vitamin digestion and absorption map04977

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf1.345
SRR3591706second leaf0.228
SRR3591707mature leaf0.000
SRR3591708Shoot apex0.921
SRR3591709Stem1.470
SRR3591710White floral bud27.973
SRR3591711White flower1.854
SRR3591712Green floral bud28.653
SRR3591713Yellow flower1.260
SRP173429 SRR8316895Juvenile bud stage 7.549
SRR8316896Juvenile bud stage 17.503
SRR8316897Juvenile bud stage 6.933
SRR8316894Third green stage 6.736
SRR8316900Third green stage 19.746
SRR8316901Third green stage 18.849
SRR8316898Complete white stage 0.824
SRR8316899Complete white stage 1.952
SRR8316903Complete white stage 1.509
SRR8316902Silver flowering stage0.363
SRR8316904Silver flowering stage0.799
SRR8316905Silver flowering stage0.340
SRR8316906Gold flowering stage 0.573
SRR8316907Gold flowering stage 0.880
SRR8316908Gold flowering stage 0.485
SRP132670SRR6706286Control8.577
SRR6706287Light intensity 50%9.099
SRR6706288Light intensity 20%8.390
CNP0000432CNS0095592Slightly white alabastrum(diploid) 124.470
CNS0095593Slightly white alabastrum(diploid) 216.825
CNS0095594Slightly white alabastrum(diploid) 328.564
CNS0095595Whole white alabastrum(diploid) 238.227
CNS0095596Whole white alabastrum(diploid) 344.250
CNS0095597Whole white alabastrum(diploid) 453.653
CNS0095598Silvery flower (diploied) 11.665
CNS0095599Silvery flower (diploied) 24.555
CNS0095600Silvery flower (diploied) 32.178
CNS0095601Golden flower (diploid) 12.085
CNS0095602Golden flower (diploid) 21.517
CNS0095603Golden flower (diploid) 31.964
CNS0095604Slightly white alabastrum(tetraploid) 142.293
CNS0095605Slightly white alabastrum(tetraploid) 244.724
CNS0095606Slightly white alabastrum(tetraploid) 33.079
CNS0095607Whole white alabastrum(tetraploid) 163.067
CNS0095608Whole white alabastrum(tetraploid) 281.471
CNS0095609Whole white alabastrum(tetraploid) 334.376
CNS0095610Silvery flower (tetraploid) 11.579
CNS0095611Silvery flower (tetraploid) 23.833
CNS0095612Silvery flower (tetraploid) 36.922
CNS0095613Golden flower (tetraploid) 11.413
CNS0095614Golden flower (tetraploid) 21.136
CNS0095615Golden flower (tetraploid) 35.427
CRA001975CRR073297Stem 110.267
CRR073298Stem 28.311
CRR073299Stem 38.031
CRR073300Leaf 119.757
CRR073301Leaf 211.845
CRR073302Leaf 39.008
CRR073303Juvenile bud 113.019
CRR073304Juvenile bud 210.462
CRR073305Juvenile bud 32.674
CRR073306Third green 17.196
CRR073307Third green 27.200
CRR073308Third green 36.415
CRR073309Second white 11.652
CRR073310Second white 21.028
CRR073311Second white 31.801
CRR073312Silver flowering 17.455
CRR073313Silver flowering 212.115
CRR073314Silver flowering 34.792
CRR073315Gold flowering 16.341
CRR073316Gold flowering 22.282
CRR073317Gold flowering 34.454
CRR073318Tawny withering 14.465
CRR073319Tawny withering 25.552
CRR073320Tawny withering 35.473