Gene detail

Detail information of GWHGAAZE013030

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_011094980.1	PREDICTED: uncharacterized protein LOC105174543 [Sesamum indicum]
trEMBL	tr\|A0A068UFV3\|A0A068UFV3_COFCA	Coffea canephora DH200=94 genomic scaffold, scaffold_22 {ECO:0000313\|EMBL:CDP06508.1}
TAIR10	AT5G01220.1	sulfoquinovosyldiacylglycerol 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	95618002	95623188	+
GWHAAZE00000003	mRNA	95618002	95623188	+
GWHAAZE00000003	exon	95618002	95618009	+
GWHAAZE00000003	exon	95618084	95618150	+
GWHAAZE00000003	exon	95618336	95618406	+
GWHAAZE00000003	exon	95618870	95618987	+
GWHAAZE00000003	exon	95619352	95619425	+
GWHAAZE00000003	exon	95620538	95620593	+
GWHAAZE00000003	exon	95620693	95620776	+
GWHAAZE00000003	exon	95620915	95621002	+
GWHAAZE00000003	exon	95621320	95621397	+
GWHAAZE00000003	exon	95621925	95621981	+
GWHAAZE00000003	exon	95622690	95623188	+
GWHAAZE00000003	CDS	95618002	95618009	+
GWHAAZE00000003	CDS	95618084	95618150	+
GWHAAZE00000003	CDS	95618336	95618406	+
GWHAAZE00000003	CDS	95618870	95618987	+
GWHAAZE00000003	CDS	95619352	95619425	+
GWHAAZE00000003	CDS	95620538	95620593	+
GWHAAZE00000003	CDS	95620693	95620776	+
GWHAAZE00000003	CDS	95620915	95621002	+
GWHAAZE00000003	CDS	95621320	95621397	+
GWHAAZE00000003	CDS	95621925	95621981	+
GWHAAZE00000003	CDS	95622690	95623188	+

Transcript Sequence
>GWHTAAZE013044 ATGCCTAGCTATGTATCAGGGTATAAAAATCGGTTCCAGAATTTTATTAAATATCTGCGAGAAATGGGCGATGAGGTAATGGTTGTGACAACTAAAGAAGGGGTGCCTCAGGAATTTTATGGAGCGAAATTGATTGGATCACGGAGTTTCCCATGCCCCTTGTATGAAAAAGTACCGCTTTCCCTGGCCCTCAGCCCGAGAATAATCTCAGCCGTTTCCGAGTTTAAACCCGACATTATTCATGCGTCATCCCCTGGTATTATGGTATTTGGTGCTCTTGCTATTGCAAAAATGTTGCAAGTTCCGATGGTTATGTCTTATCATACGCATGTCCCAGTATACATACCGAGATACACTTTTAGTTGGCTGGTCAAACCTATGTGGTCAGTCATAAAATTTCTACACACATCAGCTGATCTCACACTGGTACCATCTACTTCCATTGGAAAGGATCTTGAAGTGGCTAGAGCTACAACAGCTAACAAGATTCGAGTTTGGAATAAGGGTGTTGATTCAGAAAGCTTCCACCCGCAATATTGCTCAACTGAAATGCGATTAAAGCTAAGTGATGGTGAACCACAGAGACCGTTGATAGTTCATGTTGGACGGCTGGGATTAGAGAAGAATTTGGATTTCCTCAAAAGGGTGATGGATAGGCTTCCAGAAGCTCGAATTGCTTTTGTTGGAGATGGACCATACCGGGAGGAGCTAGAAAAACTATTCAAGGGCATGCCAGCCGTATTCATGGGGATGCTACATGGTGAAGAACTCTCACAAGCGTACGCGAGTGGAGACGTATTCCTAATGCCCTCGGAATCTGAGACGCTCGGCCAAGTTGTTATGGAAGCCATGTCATCAGGTCTCCCCGTGGTGGCAGCTCGTGCCGGCGGAATCCCAGAAATCATTTCCAAGGACCAAGATGGAAAAACCGGCTATCTTTTCAACCCAGGGGACCTCGAAGATTGCTTAAGCAAATTAGAGCCCCTTCTATACAACTTTGAATTACGAGAAACTATAGGCAATGCCGCTCGTGTAGAAATGGAGAAATATGATTGGAAGGCAGCTACTCGAAAAATACGCAACGAGCATTATAACGCTGCGATTTGGTTCTGGCAGAAGAATAAAGCGCAGCTGATGTGGCCGTTTCACTGGCTCGCCAAGTGTATGTTACTTTCGCCGGAAGATAATAAACGCCGGTGA

Network for GWHGAAZE013030

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13439.7	Glyco_transf_4	10	173	5.40E-23
PF13692.7	Glyco_trans_1_4	195	330	3.50E-26

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K06119	SQD2	Metabolic pathways	map01100
K06119	SQD2	Glycerolipid metabolism	map00561

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	24.418
	SRR3591706	second leaf	13.059
	SRR3591707	mature leaf	29.802
	SRR3591708	Shoot apex	18.762
	SRR3591709	Stem	60.142
	SRR3591710	White floral bud	32.468
	SRR3591711	White flower	44.138
	SRR3591712	Green floral bud	20.113
	SRR3591713	Yellow flower	73.281
SRP173429	SRR8316895	Juvenile bud stage	30.409
	SRR8316896	Juvenile bud stage	37.972
	SRR8316897	Juvenile bud stage	16.493
	SRR8316894	Third green stage	31.916
	SRR8316900	Third green stage	55.306
	SRR8316901	Third green stage	67.671
	SRR8316898	Complete white stage	28.813
	SRR8316899	Complete white stage	88.989
	SRR8316903	Complete white stage	45.468
	SRR8316902	Silver flowering stage	22.218
	SRR8316904	Silver flowering stage	35.703
	SRR8316905	Silver flowering stage	19.965
	SRR8316906	Gold flowering stage	31.846
	SRR8316907	Gold flowering stage	50.352
	SRR8316908	Gold flowering stage	38.015
SRP132670	SRR6706286	Control	49.145
	SRR6706287	Light intensity 50%	59.267
	SRR6706288	Light intensity 20%	56.765
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	37.362
	CNS0095593	Slightly white alabastrum(diploid) 2	53.071
	CNS0095594	Slightly white alabastrum(diploid) 3	41.819
	CNS0095595	Whole white alabastrum(diploid) 2	31.774
	CNS0095596	Whole white alabastrum(diploid) 3	37.608
	CNS0095597	Whole white alabastrum(diploid) 4	32.223
	CNS0095598	Silvery flower (diploied) 1	36.460
	CNS0095599	Silvery flower (diploied) 2	26.673
	CNS0095600	Silvery flower (diploied) 3	38.649
	CNS0095601	Golden flower (diploid) 1	28.861
	CNS0095602	Golden flower (diploid) 2	42.499
	CNS0095603	Golden flower (diploid) 3	40.988
	CNS0095604	Slightly white alabastrum(tetraploid) 1	34.509
	CNS0095605	Slightly white alabastrum(tetraploid) 2	40.059
	CNS0095606	Slightly white alabastrum(tetraploid) 3	66.210
	CNS0095607	Whole white alabastrum(tetraploid) 1	15.342
	CNS0095608	Whole white alabastrum(tetraploid) 2	13.648
	CNS0095609	Whole white alabastrum(tetraploid) 3	26.175
	CNS0095610	Silvery flower (tetraploid) 1	56.079
	CNS0095611	Silvery flower (tetraploid) 2	44.799
	CNS0095612	Silvery flower (tetraploid) 3	31.323
	CNS0095613	Golden flower (tetraploid) 1	37.918
	CNS0095614	Golden flower (tetraploid) 2	47.427
	CNS0095615	Golden flower (tetraploid) 3	62.441
CRA001975	CRR073297	Stem 1	50.371
	CRR073298	Stem 2	54.632
	CRR073299	Stem 3	40.374
	CRR073300	Leaf 1	68.501
	CRR073301	Leaf 2	71.763
	CRR073302	Leaf 3	60.350
	CRR073303	Juvenile bud 1	56.344
	CRR073304	Juvenile bud 2	53.447
	CRR073305	Juvenile bud 3	64.140
	CRR073306	Third green 1	20.495
	CRR073307	Third green 2	20.393
	CRR073308	Third green 3	19.700
	CRR073309	Second white 1	19.698
	CRR073310	Second white 2	16.043
	CRR073311	Second white 3	12.853
	CRR073312	Silver flowering 1	17.263
	CRR073313	Silver flowering 2	11.902
	CRR073314	Silver flowering 3	12.239
	CRR073315	Gold flowering 1	10.910
	CRR073316	Gold flowering 2	16.948
	CRR073317	Gold flowering 3	12.853
	CRR073318	Tawny withering 1	17.089
	CRR073319	Tawny withering 2	16.927
	CRR073320	Tawny withering 3	22.502