Detail information of GWHGAAZE013035


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006381234.10DEFECTIVE IN EXINE FORMATION 1 family protein [Populus trichocarpa]
trEMBLtr|U5G9P5|U5G9P5_POPTR0DEFECTIVE IN EXINE FORMATION 1 family protein {ECO:0000313|EMBL:ERP59031.1}
TAIR10AT3G09090.13E-150defective in exine formation protein (DEX1)

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene9569780295709027-
GWHAAZE00000003mRNA9569780295709027-
GWHAAZE00000003exon9570866195709027-
GWHAAZE00000003exon9570817795708287-
GWHAAZE00000003exon9570772995707811-
GWHAAZE00000003exon9570741095707527-
GWHAAZE00000003exon9570723195707301-
GWHAAZE00000003exon9570547795706036-
GWHAAZE00000003exon9570453895704608-
GWHAAZE00000003exon9570358795703870-
GWHAAZE00000003exon9570250995702725-
GWHAAZE00000003exon9570106995701264-
GWHAAZE00000003exon9570040895700691-
GWHAAZE00000003exon9569953595699740-
GWHAAZE00000003exon9569933195699455-
GWHAAZE00000003exon9569780295698119-
GWHAAZE00000003five_prime_UTR9570882895709027-
GWHAAZE00000003CDS9570866195708827-
GWHAAZE00000003CDS9570817795708287-
GWHAAZE00000003CDS9570772995707811-
GWHAAZE00000003CDS9570741095707527-
GWHAAZE00000003CDS9570723195707301-
GWHAAZE00000003CDS9570547795706036-
GWHAAZE00000003CDS9570453895704608-
GWHAAZE00000003CDS9570358795703870-
GWHAAZE00000003CDS9570250995702725-
GWHAAZE00000003CDS9570106995701264-
GWHAAZE00000003CDS9570040895700691-
GWHAAZE00000003CDS9569953595699740-
GWHAAZE00000003CDS9569933195699455-
GWHAAZE00000003CDS9569780295698119-
Transcript Sequence

Network for GWHGAAZE013035

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13517.7VCBS5876431.20E-06
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf30.167
SRR3591706second leaf16.973
SRR3591707mature leaf11.942
SRR3591708Shoot apex21.574
SRR3591709Stem20.603
SRR3591710White floral bud19.614
SRR3591711White flower28.358
SRR3591712Green floral bud28.977
SRR3591713Yellow flower18.813
SRP173429 SRR8316895Juvenile bud stage 16.143
SRR8316896Juvenile bud stage 20.309
SRR8316897Juvenile bud stage 10.446
SRR8316894Third green stage 9.827
SRR8316900Third green stage 28.720
SRR8316901Third green stage 26.180
SRR8316898Complete white stage 8.666
SRR8316899Complete white stage 28.229
SRR8316903Complete white stage 15.513
SRR8316902Silver flowering stage12.305
SRR8316904Silver flowering stage18.079
SRR8316905Silver flowering stage8.307
SRR8316906Gold flowering stage 29.558
SRR8316907Gold flowering stage 28.113
SRR8316908Gold flowering stage 32.489
SRP132670SRR6706286Control20.026
SRR6706287Light intensity 50%19.583
SRR6706288Light intensity 20%20.818
CNP0000432CNS0095592Slightly white alabastrum(diploid) 114.321
CNS0095593Slightly white alabastrum(diploid) 213.737
CNS0095594Slightly white alabastrum(diploid) 313.536
CNS0095595Whole white alabastrum(diploid) 216.785
CNS0095596Whole white alabastrum(diploid) 316.096
CNS0095597Whole white alabastrum(diploid) 414.688
CNS0095598Silvery flower (diploied) 118.250
CNS0095599Silvery flower (diploied) 214.855
CNS0095600Silvery flower (diploied) 327.190
CNS0095601Golden flower (diploid) 111.729
CNS0095602Golden flower (diploid) 224.676
CNS0095603Golden flower (diploid) 325.400
CNS0095604Slightly white alabastrum(tetraploid) 119.136
CNS0095605Slightly white alabastrum(tetraploid) 218.064
CNS0095606Slightly white alabastrum(tetraploid) 333.809
CNS0095607Whole white alabastrum(tetraploid) 116.705
CNS0095608Whole white alabastrum(tetraploid) 214.784
CNS0095609Whole white alabastrum(tetraploid) 326.934
CNS0095610Silvery flower (tetraploid) 128.139
CNS0095611Silvery flower (tetraploid) 227.293
CNS0095612Silvery flower (tetraploid) 320.111
CNS0095613Golden flower (tetraploid) 111.074
CNS0095614Golden flower (tetraploid) 223.825
CNS0095615Golden flower (tetraploid) 316.555
CRA001975CRR073297Stem 116.552
CRR073298Stem 213.493
CRR073299Stem 311.453
CRR073300Leaf 115.106
CRR073301Leaf 213.018
CRR073302Leaf 311.648
CRR073303Juvenile bud 115.804
CRR073304Juvenile bud 212.385
CRR073305Juvenile bud 315.002
CRR073306Third green 15.329
CRR073307Third green 24.007
CRR073308Third green 35.613
CRR073309Second white 16.309
CRR073310Second white 29.512
CRR073311Second white 37.863
CRR073312Silver flowering 15.002
CRR073313Silver flowering 25.661
CRR073314Silver flowering 35.198
CRR073315Gold flowering 14.547
CRR073316Gold flowering 27.060
CRR073317Gold flowering 32.430
CRR073318Tawny withering 114.047
CRR073319Tawny withering 214.022
CRR073320Tawny withering 313.888