Detail information of GWHGAAZE013036


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP06519.10unnamed protein product [Coffea canephora]
trEMBLtr|A0A068UE88|A0A068UE88_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_22 {ECO:0000313|EMBL:CDP06519.1}
TAIR10AT3G09100.29E-146mRNA capping enzyme family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene9571181795723782-
GWHAAZE00000003mRNA9571181795723782-
GWHAAZE00000003exon9572362795723782-
GWHAAZE00000003exon9572276395722901-
GWHAAZE00000003exon9572123195721382-
GWHAAZE00000003exon9572078295720865-
GWHAAZE00000003exon9572064795720709-
GWHAAZE00000003exon9571984895719979-
GWHAAZE00000003exon9571808195718203-
GWHAAZE00000003exon9571723795717286-
GWHAAZE00000003exon9571651895716680-
GWHAAZE00000003exon9571626795716404-
GWHAAZE00000003exon9571559295715714-
GWHAAZE00000003exon9571507995715177-
GWHAAZE00000003exon9571307295713161-
GWHAAZE00000003exon9571287095712951-
GWHAAZE00000003exon9571227595712405-
GWHAAZE00000003exon9571181795711948-
GWHAAZE00000003CDS9572362795723782-
GWHAAZE00000003CDS9572276395722901-
GWHAAZE00000003CDS9572123195721382-
GWHAAZE00000003CDS9572078295720865-
GWHAAZE00000003CDS9572064795720709-
GWHAAZE00000003CDS9571984895719979-
GWHAAZE00000003CDS9571808195718203-
GWHAAZE00000003CDS9571723795717286-
GWHAAZE00000003CDS9571651895716680-
GWHAAZE00000003CDS9571626795716404-
GWHAAZE00000003CDS9571559295715714-
GWHAAZE00000003CDS9571507995715177-
GWHAAZE00000003CDS9571307295713161-
GWHAAZE00000003CDS9571287095712951-
GWHAAZE00000003CDS9571227595712405-
GWHAAZE00000003CDS9571181795711948-
Transcript Sequence

Network for GWHGAAZE013036

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00782.21DSPc1482415.40E-14
PF01331.20mRNA_cap_enzyme2944926.30E-76
PF03919.16mRNA_cap_C5115897.50E-17
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006370biological_process7-methylguanosine mRNA capping
GO:0016311biological_processdephosphorylation
GO:0006281biological_processDNA repair
GO:0006310biological_processDNA recombination
GO:0005634cellular_componentnucleus
GO:0004484molecular_functionmRNA guanylyltransferase activity
GO:0004725molecular_functionprotein tyrosine phosphatase activity
GO:0004651molecular_functionpolynucleotide 5'-phosphatase activity
GO:0016791molecular_functionphosphatase activity
GO:0003910molecular_functionDNA ligase (ATP) activity
GO:0005524molecular_functionATP binding
GO:0008138molecular_functionprotein tyrosine/serine/threonine phosphatase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf20.368
SRR3591706second leaf13.946
SRR3591707mature leaf16.132
SRR3591708Shoot apex24.372
SRR3591709Stem26.984
SRR3591710White floral bud21.225
SRR3591711White flower31.333
SRR3591712Green floral bud16.853
SRR3591713Yellow flower24.781
SRP173429 SRR8316895Juvenile bud stage 12.340
SRR8316896Juvenile bud stage 16.069
SRR8316897Juvenile bud stage 6.751
SRR8316894Third green stage 7.479
SRR8316900Third green stage 14.663
SRR8316901Third green stage 13.777
SRR8316898Complete white stage 6.908
SRR8316899Complete white stage 23.056
SRR8316903Complete white stage 13.458
SRR8316902Silver flowering stage10.148
SRR8316904Silver flowering stage15.949
SRR8316905Silver flowering stage6.947
SRR8316906Gold flowering stage 26.271
SRR8316907Gold flowering stage 21.122
SRR8316908Gold flowering stage 23.023
SRP132670SRR6706286Control8.955
SRR6706287Light intensity 50%8.784
SRR6706288Light intensity 20%8.519
CNP0000432CNS0095592Slightly white alabastrum(diploid) 111.133
CNS0095593Slightly white alabastrum(diploid) 210.526
CNS0095594Slightly white alabastrum(diploid) 39.598
CNS0095595Whole white alabastrum(diploid) 210.197
CNS0095596Whole white alabastrum(diploid) 37.035
CNS0095597Whole white alabastrum(diploid) 48.002
CNS0095598Silvery flower (diploied) 118.005
CNS0095599Silvery flower (diploied) 212.193
CNS0095600Silvery flower (diploied) 316.982
CNS0095601Golden flower (diploid) 112.852
CNS0095602Golden flower (diploid) 218.940
CNS0095603Golden flower (diploid) 318.312
CNS0095604Slightly white alabastrum(tetraploid) 113.208
CNS0095605Slightly white alabastrum(tetraploid) 29.785
CNS0095606Slightly white alabastrum(tetraploid) 321.819
CNS0095607Whole white alabastrum(tetraploid) 18.623
CNS0095608Whole white alabastrum(tetraploid) 26.746
CNS0095609Whole white alabastrum(tetraploid) 311.258
CNS0095610Silvery flower (tetraploid) 118.744
CNS0095611Silvery flower (tetraploid) 216.288
CNS0095612Silvery flower (tetraploid) 315.980
CNS0095613Golden flower (tetraploid) 112.136
CNS0095614Golden flower (tetraploid) 217.594
CNS0095615Golden flower (tetraploid) 315.192
CRA001975CRR073297Stem 111.181
CRR073298Stem 211.431
CRR073299Stem 37.998
CRR073300Leaf 111.863
CRR073301Leaf 27.205
CRR073302Leaf 33.530
CRR073303Juvenile bud 16.010
CRR073304Juvenile bud 23.141
CRR073305Juvenile bud 37.494
CRR073306Third green 12.944
CRR073307Third green 21.602
CRR073308Third green 34.166
CRR073309Second white 12.863
CRR073310Second white 27.418
CRR073311Second white 35.678
CRR073312Silver flowering 16.277
CRR073313Silver flowering 25.182
CRR073314Silver flowering 33.462
CRR073315Gold flowering 15.875
CRR073316Gold flowering 211.868
CRR073317Gold flowering 35.746
CRR073318Tawny withering 19.625
CRR073319Tawny withering 210.175
CRR073320Tawny withering 39.953