Detail information of GWHGAAZE013040


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009374310.10PREDICTED: neutral ceramidase [Pyrus x bretschneideri]
Swissprottr|Q304B9|NCASE_ARATH0Neutral ceramidase (Precursor)
trEMBLtr|A0A061GXC4|A0A061GXC4_THECC0Neutral/alkaline non-lysosomal ceramidase isoform 1 {ECO:0000313|EMBL:EOY33837.1}
TAIR10AT5G58980.10Neutral/alkaline non-lysosomal ceramidase

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene9577757495782714-
GWHAAZE00000003mRNA9577757495782714-
GWHAAZE00000003exon9577757495778122-
GWHAAZE00000003exon9577866895778837-
GWHAAZE00000003exon9577990895779971-
GWHAAZE00000003exon9578067495780799-
GWHAAZE00000003exon9578149995781766-
GWHAAZE00000003exon9578246195782714-
GWHAAZE00000003CDS9578246195782714-
GWHAAZE00000003CDS9578149995781766-
GWHAAZE00000003CDS9578067495780799-
GWHAAZE00000003CDS9577990895779971-
GWHAAZE00000003CDS9577866895778837-
GWHAAZE00000003CDS9577757495778122-
Transcript Sequence

Network for GWHGAAZE013040

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04734.14Ceramidase_alk303103.20E-126
PF17048.6Ceramidse_alk_C3124751.30E-50
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12349ASAH2 Metabolic pathways map01100
Sphingolipid metabolismmap00600
Sphingolipid signaling pathwaymap04071

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf31.041
SRR3591706second leaf44.023
SRR3591707mature leaf31.742
SRR3591708Shoot apex58.913
SRR3591709Stem36.885
SRR3591710White floral bud34.947
SRR3591711White flower37.743
SRR3591712Green floral bud52.038
SRR3591713Yellow flower19.801
SRP173429 SRR8316895Juvenile bud stage 24.443
SRR8316896Juvenile bud stage 30.970
SRR8316897Juvenile bud stage 13.633
SRR8316894Third green stage 16.190
SRR8316900Third green stage 40.239
SRR8316901Third green stage 38.992
SRR8316898Complete white stage 13.082
SRR8316899Complete white stage 53.758
SRR8316903Complete white stage 24.351
SRR8316902Silver flowering stage13.113
SRR8316904Silver flowering stage16.435
SRR8316905Silver flowering stage6.576
SRR8316906Gold flowering stage 28.701
SRR8316907Gold flowering stage 29.105
SRR8316908Gold flowering stage 28.734
SRP132670SRR6706286Control38.143
SRR6706287Light intensity 50%36.828
SRR6706288Light intensity 20%40.823
CNP0000432CNS0095592Slightly white alabastrum(diploid) 133.203
CNS0095593Slightly white alabastrum(diploid) 226.283
CNS0095594Slightly white alabastrum(diploid) 334.297
CNS0095595Whole white alabastrum(diploid) 223.695
CNS0095596Whole white alabastrum(diploid) 322.384
CNS0095597Whole white alabastrum(diploid) 425.003
CNS0095598Silvery flower (diploied) 137.753
CNS0095599Silvery flower (diploied) 238.076
CNS0095600Silvery flower (diploied) 349.310
CNS0095601Golden flower (diploid) 142.245
CNS0095602Golden flower (diploid) 250.068
CNS0095603Golden flower (diploid) 349.011
CNS0095604Slightly white alabastrum(tetraploid) 125.100
CNS0095605Slightly white alabastrum(tetraploid) 220.124
CNS0095606Slightly white alabastrum(tetraploid) 338.477
CNS0095607Whole white alabastrum(tetraploid) 117.827
CNS0095608Whole white alabastrum(tetraploid) 215.766
CNS0095609Whole white alabastrum(tetraploid) 326.286
CNS0095610Silvery flower (tetraploid) 140.287
CNS0095611Silvery flower (tetraploid) 245.422
CNS0095612Silvery flower (tetraploid) 330.475
CNS0095613Golden flower (tetraploid) 117.179
CNS0095614Golden flower (tetraploid) 229.561
CNS0095615Golden flower (tetraploid) 314.322
CRA001975CRR073297Stem 140.823
CRR073298Stem 236.583
CRR073299Stem 337.426
CRR073300Leaf 146.012
CRR073301Leaf 243.045
CRR073302Leaf 336.630
CRR073303Juvenile bud 143.895
CRR073304Juvenile bud 230.606
CRR073305Juvenile bud 346.577
CRR073306Third green 110.107
CRR073307Third green 28.724
CRR073308Third green 312.748
CRR073309Second white 113.278
CRR073310Second white 217.228
CRR073311Second white 39.579
CRR073312Silver flowering 16.953
CRR073313Silver flowering 26.386
CRR073314Silver flowering 37.948
CRR073315Gold flowering 128.810
CRR073316Gold flowering 236.765
CRR073317Gold flowering 319.857
CRR073318Tawny withering 130.579
CRR073319Tawny withering 230.967
CRR073320Tawny withering 323.166