Gene detail

Detail information of GWHGAAZE013041

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011009147.1	3.5986E-156	PREDICTED: neutral ceramidase [Populus euphratica]
Swissprot	tr\|Q304B9\|NCASE_ARATH	6E-145	Neutral ceramidase (Precursor)
trEMBL	tr\|M5WJZ2\|M5WJZ2_PRUPE	3E-156	Uncharacterized protein {ECO:0000313\|EMBL:EMJ09553.1}
TAIR10	AT1G07380.1	2E-124	Neutral/alkaline non-lysosomal ceramidase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	95784713	95790771	-
GWHAAZE00000003	mRNA	95784713	95790771	-
GWHAAZE00000003	exon	95790428	95790771	-
GWHAAZE00000003	exon	95785902	95786110	-
GWHAAZE00000003	exon	95784713	95785047	-
GWHAAZE00000003	CDS	95790428	95790771	-
GWHAAZE00000003	CDS	95785902	95786110	-
GWHAAZE00000003	CDS	95784713	95785047	-

Transcript Sequence
>GWHTAAZE013055 ATGGAGATGCCTTTTATTTTCTTCGGGTTTGTAAGGAGACTGTCTACAAGTAAGTGGTTTGGGGCTATTCTACTATTCATACTACTAAATGGCAGAGGGGCATTATTGGAATCTACATACTTGATTGGCCTTGGAAGCTATGACATAACGGGACCCGCTGCGGATGTGAATATGATGGGATATGCAAATATGGAGCAAATTGCCTCAGGAATTCACTTCAGGTTACAAGCCCGAACGTTTATCGTGGCAGAACCTCAAGGGAATCATGTAGTATTTGTAAATCTTGATGCTTGCATGGCCTCACAAATTGTAACAATAAAAGTTCTTGAAAGACTGAAAGCAAGGTATGGTGACCTGTATAATGAACAGAATGTAGCGATCAGCGGTATTCACACACATGCTGGCCCTGGAGGCTATCTCCAGTATGTTGTATATATTGTAACGTCTCTTGGTTTTGTACGCCAATCATTCGATGTAATTGTTGATGGCATCGAGAAAAGCATTACTCAAGCTCATGAGAATCTTAGCCCGGGGTCAATCTTTGTTAATAAAGGAGAACTCTTAGATGCGGGTATAAACCGAAGTCCAAGTGCATATCTCAACAATCCTGCCGAAGAAAAGAGTAAATATAATTATGATGTTGACAAAGAAATGACCCTCTTAAAGTTTGTAGACGATGTATGGGGCCCAGTTGGGAGCTTTAACTGGTTTGCAACTCATGGAACTTCTATGAGTCGTACAAACTCGTTGATTAGTGGCGACAATAAGGGTGCTGCCGCTCGATTTATGGAGGATTGGTTCGAAAATGATTTTTCTCTTGAAGATGTTGACAGTTTTATGCCAATAAATCTGGAGTTGTTAGAATACCTCGAAGAGTTTCCAACATAA

Network for GWHGAAZE013041

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04734.14	Ceramidase_alk	40	270	5.40E-109

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12349	ASAH2	Metabolic pathways	map01100
		Sphingolipid metabolism	map00600
		Sphingolipid signaling pathway	map04071

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	25.391
	SRR3591706	second leaf	39.930
	SRR3591707	mature leaf	25.541
	SRR3591708	Shoot apex	35.265
	SRR3591709	Stem	28.550
	SRR3591710	White floral bud	26.026
	SRR3591711	White flower	28.019
	SRR3591712	Green floral bud	32.450
	SRR3591713	Yellow flower	12.710
SRP173429	SRR8316895	Juvenile bud stage	22.025
	SRR8316896	Juvenile bud stage	24.675
	SRR8316897	Juvenile bud stage	11.867
	SRR8316894	Third green stage	11.562
	SRR8316900	Third green stage	32.158
	SRR8316901	Third green stage	27.172
	SRR8316898	Complete white stage	11.845
	SRR8316899	Complete white stage	42.725
	SRR8316903	Complete white stage	19.775
	SRR8316902	Silver flowering stage	10.575
	SRR8316904	Silver flowering stage	18.893
	SRR8316905	Silver flowering stage	7.754
	SRR8316906	Gold flowering stage	29.115
	SRR8316907	Gold flowering stage	24.614
	SRR8316908	Gold flowering stage	30.857
SRP132670	SRR6706286	Control	28.421
	SRR6706287	Light intensity 50%	28.891
	SRR6706288	Light intensity 20%	31.596
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	9.130
	CNS0095593	Slightly white alabastrum(diploid) 2	8.279
	CNS0095594	Slightly white alabastrum(diploid) 3	9.477
	CNS0095595	Whole white alabastrum(diploid) 2	10.992
	CNS0095596	Whole white alabastrum(diploid) 3	5.568
	CNS0095597	Whole white alabastrum(diploid) 4	9.878
	CNS0095598	Silvery flower (diploied) 1	18.397
	CNS0095599	Silvery flower (diploied) 2	14.796
	CNS0095600	Silvery flower (diploied) 3	37.858
	CNS0095601	Golden flower (diploid) 1	22.566
	CNS0095602	Golden flower (diploid) 2	41.641
	CNS0095603	Golden flower (diploid) 3	38.869
	CNS0095604	Slightly white alabastrum(tetraploid) 1	10.924
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.790
	CNS0095606	Slightly white alabastrum(tetraploid) 3	29.627
	CNS0095607	Whole white alabastrum(tetraploid) 1	8.120
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.063
	CNS0095609	Whole white alabastrum(tetraploid) 3	19.099
	CNS0095610	Silvery flower (tetraploid) 1	33.710
	CNS0095611	Silvery flower (tetraploid) 2	35.825
	CNS0095612	Silvery flower (tetraploid) 3	24.502
	CNS0095613	Golden flower (tetraploid) 1	7.366
	CNS0095614	Golden flower (tetraploid) 2	21.956
	CNS0095615	Golden flower (tetraploid) 3	9.715
CRA001975	CRR073297	Stem 1	12.836
	CRR073298	Stem 2	11.976
	CRR073299	Stem 3	8.986
	CRR073300	Leaf 1	12.962
	CRR073301	Leaf 2	7.201
	CRR073302	Leaf 3	8.668
	CRR073303	Juvenile bud 1	11.904
	CRR073304	Juvenile bud 2	8.024
	CRR073305	Juvenile bud 3	15.334
	CRR073306	Third green 1	2.641
	CRR073307	Third green 2	1.437
	CRR073308	Third green 3	2.815
	CRR073309	Second white 1	4.962
	CRR073310	Second white 2	4.256
	CRR073311	Second white 3	3.664
	CRR073312	Silver flowering 1	3.058
	CRR073313	Silver flowering 2	3.895
	CRR073314	Silver flowering 3	0.750
	CRR073315	Gold flowering 1	4.664
	CRR073316	Gold flowering 2	12.772
	CRR073317	Gold flowering 3	7.362
	CRR073318	Tawny withering 1	6.423
	CRR073319	Tawny withering 2	7.852
	CRR073320	Tawny withering 3	2.737