Gene detail

Detail information of GWHGAAZE013045

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KHG25436.1	3.1882E-162	Tubulin beta-8 chain -like protein [Gossypium arboreum]
Swissprot	tr\|P29516\|TBB8_ARATH	1E-161	Tubulin beta-8 chain
trEMBL	tr\|V4LT33\|V4LT33_EUTSA	8E-161	Uncharacterized protein {ECO:0000313\|EMBL:ESQ45647.1}
TAIR10	AT5G62700.1	4E-120	tubulin beta chain 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	95849173	95851435	+
GWHAAZE00000003	mRNA	95849173	95851435	+
GWHAAZE00000003	exon	95849173	95849566	+
GWHAAZE00000003	exon	95850748	95851017	+
GWHAAZE00000003	exon	95851413	95851435	+
GWHAAZE00000003	CDS	95849173	95849566	+
GWHAAZE00000003	CDS	95850748	95851017	+
GWHAAZE00000003	CDS	95851413	95851435	+

Transcript Sequence
>GWHTAAZE013059 ATGCGAGAAATCCTTCATATCCAAGGAGGCCAATGCGGCAACCAAATCGGGGCCAAGTTCTGGGAAGTAGTCTGTGCCGAACACGGCATAGATTCCACCGGACGCTACATGGGAGACTCGGATCTTCAACTTGAACGAATTAATGTCTACTACAACGAAGCAAGCTGTGGTAGATATGTACCTAGAGCTGTACTCATGGATCTTGAGCCTGGTACTATGGATAGTCTCAGATCCGGGCCTTATGGCCAGATTTTCCGACCCGATAACTTCGTTTTCGGCCAGTCTGGGGCCGGGAATAATTGGGCTAAAGGCCATTATACCGAGGGTGCTGAGTTGATTGATTCTGTGCTTGATGTTGTCAGGAAGGAAGCGGAGAATTGCGACTGTCTGCAGGGTTTTCAGGTGTGCCATTCTCTAGGAGGAGGAACAGGGTCTGGAATGGGTACCCTATTGATTTCAAAAATCAGAGAGGAATACCCAGACCGGATGATGCTCACTTTCTCTGTGTTCCCCTCTCCTAAGGTTTCAGATACTGTTGTTGAGCCTTACAATGCTACCTTGTCTGTTCATCAATTGGTTGAAAATGCTGATGAGTGTATGGTTCTTGACAATGAGGCTCTCTATGACATCTGTTTCCGTACCCTAAAGCTCACAACTCCAAGTTGGCCGACTAGTTTTGAGCCATGA

Network for GWHGAAZE013045

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00091.26	Tubulin	3	211	1.30E-70

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K07375	TUBB	Phagosome	map04145
K07375	TUBB	Gap junction	map04540

Gene Ontology

GO term	Ontology	Name
GO:0007017	biological_process	microtubule-based process
GO:0005874	cellular_component	microtubule
GO:0005200	molecular_function	structural constituent of cytoskeleton
GO:0005525	molecular_function	GTP binding
GO:0003924	molecular_function	GTPase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	262.759
	SRR3591706	second leaf	153.147
	SRR3591707	mature leaf	56.408
	SRR3591708	Shoot apex	283.011
	SRR3591709	Stem	89.504
	SRR3591710	White floral bud	117.847
	SRR3591711	White flower	111.626
	SRR3591712	Green floral bud	131.376
	SRR3591713	Yellow flower	97.451
SRP173429	SRR8316895	Juvenile bud stage	63.342
	SRR8316896	Juvenile bud stage	82.414
	SRR8316897	Juvenile bud stage	37.928
	SRR8316894	Third green stage	30.988
	SRR8316900	Third green stage	82.240
	SRR8316901	Third green stage	64.790
	SRR8316898	Complete white stage	45.714
	SRR8316899	Complete white stage	87.872
	SRR8316903	Complete white stage	55.917
	SRR8316902	Silver flowering stage	26.658
	SRR8316904	Silver flowering stage	36.989
	SRR8316905	Silver flowering stage	18.217
	SRR8316906	Gold flowering stage	66.304
	SRR8316907	Gold flowering stage	76.217
	SRR8316908	Gold flowering stage	102.336
SRP132670	SRR6706286	Control	79.339
	SRR6706287	Light intensity 50%	90.880
	SRR6706288	Light intensity 20%	101.383
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	81.946
	CNS0095593	Slightly white alabastrum(diploid) 2	85.559
	CNS0095594	Slightly white alabastrum(diploid) 3	69.388
	CNS0095595	Whole white alabastrum(diploid) 2	60.463
	CNS0095596	Whole white alabastrum(diploid) 3	56.786
	CNS0095597	Whole white alabastrum(diploid) 4	48.257
	CNS0095598	Silvery flower (diploied) 1	44.995
	CNS0095599	Silvery flower (diploied) 2	50.770
	CNS0095600	Silvery flower (diploied) 3	69.449
	CNS0095601	Golden flower (diploid) 1	23.960
	CNS0095602	Golden flower (diploid) 2	53.922
	CNS0095603	Golden flower (diploid) 3	50.185
	CNS0095604	Slightly white alabastrum(tetraploid) 1	108.971
	CNS0095605	Slightly white alabastrum(tetraploid) 2	86.754
	CNS0095606	Slightly white alabastrum(tetraploid) 3	224.216
	CNS0095607	Whole white alabastrum(tetraploid) 1	47.839
	CNS0095608	Whole white alabastrum(tetraploid) 2	39.956
	CNS0095609	Whole white alabastrum(tetraploid) 3	131.092
	CNS0095610	Silvery flower (tetraploid) 1	102.236
	CNS0095611	Silvery flower (tetraploid) 2	93.700
	CNS0095612	Silvery flower (tetraploid) 3	105.872
	CNS0095613	Golden flower (tetraploid) 1	54.336
	CNS0095614	Golden flower (tetraploid) 2	92.034
	CNS0095615	Golden flower (tetraploid) 3	60.343
CRA001975	CRR073297	Stem 1	143.994
	CRR073298	Stem 2	140.647
	CRR073299	Stem 3	190.310
	CRR073300	Leaf 1	137.991
	CRR073301	Leaf 2	127.155
	CRR073302	Leaf 3	161.122
	CRR073303	Juvenile bud 1	147.697
	CRR073304	Juvenile bud 2	147.209
	CRR073305	Juvenile bud 3	158.334
	CRR073306	Third green 1	100.220
	CRR073307	Third green 2	99.834
	CRR073308	Third green 3	101.929
	CRR073309	Second white 1	93.927
	CRR073310	Second white 2	63.170
	CRR073311	Second white 3	54.293
	CRR073312	Silver flowering 1	62.646
	CRR073313	Silver flowering 2	83.178
	CRR073314	Silver flowering 3	55.348
	CRR073315	Gold flowering 1	38.776
	CRR073316	Gold flowering 2	49.479
	CRR073317	Gold flowering 3	61.094
	CRR073318	Tawny withering 1	226.009
	CRR073319	Tawny withering 2	138.775
	CRR073320	Tawny withering 3	294.692