Detail information of GWHGAAZE013050


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009613651.11.06465E-92PREDICTED: uncharacterized protein LOC104106742 [Nicotiana tomentosiformis]
trEMBLtr|K4CRK3|K4CRK3_SOLLC3E-87Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc09g011770.2.1}
TAIR10AT5G05830.13E-46RING/FYVE/PHD zinc finger superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene9591491895917877+
GWHAAZE00000003mRNA9591491895917877+
GWHAAZE00000003exon9591491895915300+
GWHAAZE00000003exon9591764095917877+
GWHAAZE00000003CDS9591491895915300+
GWHAAZE00000003CDS9591764095917877+
Transcript Sequence

Network for GWHGAAZE013050

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF12906.8RINGv871331.00E-08
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0008270molecular_functionzinc ion binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf6.622
SRR3591706second leaf4.457
SRR3591707mature leaf2.625
SRR3591708Shoot apex9.585
SRR3591709Stem9.799
SRR3591710White floral bud7.080
SRR3591711White flower0.738
SRR3591712Green floral bud9.056
SRR3591713Yellow flower0.139
SRP173429 SRR8316895Juvenile bud stage 9.088
SRR8316896Juvenile bud stage 14.966
SRR8316897Juvenile bud stage 3.210
SRR8316894Third green stage 4.303
SRR8316900Third green stage 13.255
SRR8316901Third green stage 10.733
SRR8316898Complete white stage 3.448
SRR8316899Complete white stage 15.730
SRR8316903Complete white stage 6.461
SRR8316902Silver flowering stage0.986
SRR8316904Silver flowering stage1.942
SRR8316905Silver flowering stage0.104
SRR8316906Gold flowering stage 0.341
SRR8316907Gold flowering stage 0.417
SRR8316908Gold flowering stage 0.497
SRP132670SRR6706286Control12.258
SRR6706287Light intensity 50%11.516
SRR6706288Light intensity 20%12.095
CNP0000432CNS0095592Slightly white alabastrum(diploid) 111.499
CNS0095593Slightly white alabastrum(diploid) 27.089
CNS0095594Slightly white alabastrum(diploid) 310.629
CNS0095595Whole white alabastrum(diploid) 29.145
CNS0095596Whole white alabastrum(diploid) 35.882
CNS0095597Whole white alabastrum(diploid) 49.524
CNS0095598Silvery flower (diploied) 10.633
CNS0095599Silvery flower (diploied) 21.682
CNS0095600Silvery flower (diploied) 31.171
CNS0095601Golden flower (diploid) 10.792
CNS0095602Golden flower (diploid) 20.372
CNS0095603Golden flower (diploid) 30.410
CNS0095604Slightly white alabastrum(tetraploid) 14.702
CNS0095605Slightly white alabastrum(tetraploid) 27.549
CNS0095606Slightly white alabastrum(tetraploid) 35.794
CNS0095607Whole white alabastrum(tetraploid) 11.910
CNS0095608Whole white alabastrum(tetraploid) 22.339
CNS0095609Whole white alabastrum(tetraploid) 34.700
CNS0095610Silvery flower (tetraploid) 13.339
CNS0095611Silvery flower (tetraploid) 22.242
CNS0095612Silvery flower (tetraploid) 35.173
CNS0095613Golden flower (tetraploid) 10.194
CNS0095614Golden flower (tetraploid) 24.317
CNS0095615Golden flower (tetraploid) 32.443
CRA001975CRR073297Stem 118.741
CRR073298Stem 219.736
CRR073299Stem 325.259
CRR073300Leaf 117.897
CRR073301Leaf 217.811
CRR073302Leaf 318.425
CRR073303Juvenile bud 118.106
CRR073304Juvenile bud 210.786
CRR073305Juvenile bud 319.100
CRR073306Third green 14.668
CRR073307Third green 28.945
CRR073308Third green 314.356
CRR073309Second white 10.188
CRR073310Second white 20.386
CRR073311Second white 30.291
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.343
CRR073314Silver flowering 30.000
CRR073315Gold flowering 12.317
CRR073316Gold flowering 25.486
CRR073317Gold flowering 32.992
CRR073318Tawny withering 17.272
CRR073319Tawny withering 25.215
CRR073320Tawny withering 35.661