Detail information of GWHGAAZE013075


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDY57148.10BnaC04g53540D [Brassica napus]
Swissprottr|Q0PGJ6|AKRC9_ARATH0Aldo-keto reductase family 4 member C9
trEMBLtr|A0A078J3Q2|A0A078J3Q2_BRANA0BnaC04g53540D protein {ECO:0000313|EMBL:CDY57148.1}
TAIR10AT2G37770.24E-138NAD(P)-linked oxidoreductase superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene9635921796376331-
GWHAAZE00000003mRNA9635921796376331-
GWHAAZE00000003exon9637620996376331-
GWHAAZE00000003exon9637495496375004-
GWHAAZE00000003exon9637396196374037-
GWHAAZE00000003exon9637374596373832-
GWHAAZE00000003exon9637238096372655-
GWHAAZE00000003exon9637114696371394-
GWHAAZE00000003exon9637004096370115-
GWHAAZE00000003exon9636978496369838-
GWHAAZE00000003exon9636907896369183-
GWHAAZE00000003exon9636878996368865-
GWHAAZE00000003exon9636279996362886-
GWHAAZE00000003exon9636203896362313-
GWHAAZE00000003exon9636070096360813-
GWHAAZE00000003exon9635974496359821-
GWHAAZE00000003exon9635921796359225-
GWHAAZE00000003CDS9637620996376331-
GWHAAZE00000003CDS9637495496375004-
GWHAAZE00000003CDS9637396196374037-
GWHAAZE00000003CDS9637374596373832-
GWHAAZE00000003CDS9637238096372655-
GWHAAZE00000003CDS9637114696371394-
GWHAAZE00000003CDS9637004096370115-
GWHAAZE00000003CDS9636978496369838-
GWHAAZE00000003CDS9636907896369183-
GWHAAZE00000003CDS9636878996368865-
GWHAAZE00000003CDS9636279996362886-
GWHAAZE00000003CDS9636203896362313-
GWHAAZE00000003CDS9636070096360813-
GWHAAZE00000003CDS9635974496359821-
GWHAAZE00000003CDS9635921796359225-
Transcript Sequence

Network for GWHGAAZE013075

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00248.22Aldo_ket_red202878.90E-49
PF00248.22Aldo_ket_red3905214.10E-25
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00002AKR1A1, adh Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Microbial metabolism in diverse environmentsmap01120
Degradation of aromatic compoundsmap01220
Glycolysis / Gluconeogenesismap00010
Pentose and glucuronate interconversionsmap00040
Glycerolipid metabolismmap00561
Caprolactam degradationmap00930

Gene Ontology

GO term OntologyName
GO:0055114biological_processoxidation-reduction process
GO:0016491molecular_functionoxidoreductase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf46.491
SRR3591706second leaf16.532
SRR3591707mature leaf13.337
SRR3591708Shoot apex30.366
SRR3591709Stem44.818
SRR3591710White floral bud7.474
SRR3591711White flower18.846
SRR3591712Green floral bud13.721
SRR3591713Yellow flower50.365
SRP173429 SRR8316895Juvenile bud stage 10.289
SRR8316896Juvenile bud stage 18.696
SRR8316897Juvenile bud stage 7.850
SRR8316894Third green stage 6.837
SRR8316900Third green stage 26.714
SRR8316901Third green stage 23.113
SRR8316898Complete white stage 14.062
SRR8316899Complete white stage 32.276
SRR8316903Complete white stage 14.916
SRR8316902Silver flowering stage14.418
SRR8316904Silver flowering stage13.884
SRR8316905Silver flowering stage9.201
SRR8316906Gold flowering stage 44.968
SRR8316907Gold flowering stage 34.336
SRR8316908Gold flowering stage 53.610
SRP132670SRR6706286Control19.266
SRR6706287Light intensity 50%20.268
SRR6706288Light intensity 20%24.523
CNP0000432CNS0095592Slightly white alabastrum(diploid) 120.216
CNS0095593Slightly white alabastrum(diploid) 218.363
CNS0095594Slightly white alabastrum(diploid) 320.659
CNS0095595Whole white alabastrum(diploid) 221.043
CNS0095596Whole white alabastrum(diploid) 322.023
CNS0095597Whole white alabastrum(diploid) 418.363
CNS0095598Silvery flower (diploied) 122.977
CNS0095599Silvery flower (diploied) 228.366
CNS0095600Silvery flower (diploied) 335.630
CNS0095601Golden flower (diploid) 128.895
CNS0095602Golden flower (diploid) 250.747
CNS0095603Golden flower (diploid) 354.937
CNS0095604Slightly white alabastrum(tetraploid) 123.391
CNS0095605Slightly white alabastrum(tetraploid) 220.866
CNS0095606Slightly white alabastrum(tetraploid) 320.240
CNS0095607Whole white alabastrum(tetraploid) 116.019
CNS0095608Whole white alabastrum(tetraploid) 215.825
CNS0095609Whole white alabastrum(tetraploid) 326.804
CNS0095610Silvery flower (tetraploid) 148.267
CNS0095611Silvery flower (tetraploid) 241.816
CNS0095612Silvery flower (tetraploid) 339.080
CNS0095613Golden flower (tetraploid) 158.418
CNS0095614Golden flower (tetraploid) 257.707
CNS0095615Golden flower (tetraploid) 319.751
CRA001975CRR073297Stem 117.424
CRR073298Stem 216.028
CRR073299Stem 316.259
CRR073300Leaf 126.361
CRR073301Leaf 228.428
CRR073302Leaf 330.447
CRR073303Juvenile bud 135.038
CRR073304Juvenile bud 242.378
CRR073305Juvenile bud 329.672
CRR073306Third green 115.434
CRR073307Third green 211.352
CRR073308Third green 311.248
CRR073309Second white 132.363
CRR073310Second white 226.167
CRR073311Second white 317.900
CRR073312Silver flowering 123.131
CRR073313Silver flowering 231.758
CRR073314Silver flowering 329.968
CRR073315Gold flowering 124.618
CRR073316Gold flowering 226.744
CRR073317Gold flowering 323.128
CRR073318Tawny withering 161.065
CRR073319Tawny withering 252.937
CRR073320Tawny withering 348.095