Gene detail

Detail information of GWHGAAZE013079

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010654244.1	1.5653E-127	PREDICTED: tropinone reductase homolog [Vitis vinifera]
Swissprot	tr\|P50165\|TRNH_DATST	2E-107	Tropinone reductase homolog
trEMBL	tr\|A0A068V307\|A0A068V307_COFCA	7E-123	Coffea canephora DH200=94 genomic scaffold, scaffold_81 {ECO:0000313\|EMBL:CDP14238.1}
TAIR10	AT5G06060.1	1E-84	NAD(P)-binding Rossmann-fold superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	96421077	96423194	-
GWHAAZE00000003	mRNA	96421077	96423194	-
GWHAAZE00000003	exon	96421077	96421271	-
GWHAAZE00000003	exon	96421888	96421994	-
GWHAAZE00000003	exon	96422101	96422317	-
GWHAAZE00000003	exon	96422635	96422842	-
GWHAAZE00000003	exon	96423106	96423194	-
GWHAAZE00000003	CDS	96423106	96423194	-
GWHAAZE00000003	CDS	96422635	96422842	-
GWHAAZE00000003	CDS	96422101	96422317	-
GWHAAZE00000003	CDS	96421888	96421994	-
GWHAAZE00000003	CDS	96421077	96421271	-

Transcript Sequence
>GWHTAAZE013093 ATGGCAAATACAGAGCTTATTAACAGAGACAAGAGGTGGTCTCTTCAGGGTACTACGGCCCTCGTCACCGGTGGCACAAGAGGAATTGGATACTCCATAGTGGAGGAATTAGCTGGATTTGGTGCAGCTATACATACTTGTTCAAGGAACCAGGAAGAATTGAATGAAAGGCTAAAAGAGTGGGAAGGAAAGGGTTATAAAGTAACAGGTTCACTATGTGACACAACATCTAAGGAACAAAGAGAAGAGTTGATGAAGACTGTTGCCTCTGTCTTTGATGGAAAGCTCAACATTCTTATAAATAATGCTGCAAGAACTCTAATGAAACGCGCAATTGCTCACGCTGGAGATGATTGCTCGAGTATTTTCTCGACCAACTTTGAGTCCCCTTATCATTTGTGCCAACTCGCATACCCACTATTGAAAGAATCTGGATCAGGCAGTATCGTCTTCATTTCATCTATGGCCGGTGTTATAGCCCTACCGGCACTTCCGGTCTACGGAGCTACTAAAGCTGCAATCAATCAAGTTACCAAGAATTTAGCATGTGAATGGGCTGCGGACAATATTCGCGTCAATGCTGTTGCCCCTTGGGCTGTCAGGACCACTGCTTCAAGACCTGATATTGACGATGCGGTTGGAAGTGTAATGATGCAATCACTTGGTCGAACACCTCTGCGGCCAATTGCAGAACCTGAAGAGATATCTTCACTGGCAGCCTACCTTTGTCTTCCAGCAGCTTCATTTATTACTGGCCAAATTATTGTTGTTGATGCTGGTTATACTGCCGGTGGTTTTAAATTACCTTCTTCTTAA

Network for GWHGAAZE013079

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13561.7	adh_short_C2	26	262	8.80E-54

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K08081	TR1	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Tropane, piperidine and pyridine alkaloid biosynthesis	map00960

Gene Ontology

GO term	Ontology	Name
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.430
	SRR3591706	second leaf	2.410
	SRR3591707	mature leaf	14.012
	SRR3591708	Shoot apex	0.782
	SRR3591709	Stem	2.081
	SRR3591710	White floral bud	4.089
	SRR3591711	White flower	1.417
	SRR3591712	Green floral bud	0.866
	SRR3591713	Yellow flower	3.673
SRP173429	SRR8316895	Juvenile bud stage	0.346
	SRR8316896	Juvenile bud stage	0.876
	SRR8316897	Juvenile bud stage	0.123
	SRR8316894	Third green stage	0.140
	SRR8316900	Third green stage	0.553
	SRR8316901	Third green stage	0.255
	SRR8316898	Complete white stage	0.286
	SRR8316899	Complete white stage	0.563
	SRR8316903	Complete white stage	0.216
	SRR8316902	Silver flowering stage	0.394
	SRR8316904	Silver flowering stage	0.934
	SRR8316905	Silver flowering stage	0.359
	SRR8316906	Gold flowering stage	1.817
	SRR8316907	Gold flowering stage	2.174
	SRR8316908	Gold flowering stage	5.261
SRP132670	SRR6706286	Control	4.348
	SRR6706287	Light intensity 50%	2.163
	SRR6706288	Light intensity 20%	1.411
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.298
	CNS0095593	Slightly white alabastrum(diploid) 2	1.044
	CNS0095594	Slightly white alabastrum(diploid) 3	3.055
	CNS0095595	Whole white alabastrum(diploid) 2	0.108
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.169
	CNS0095598	Silvery flower (diploied) 1	2.518
	CNS0095599	Silvery flower (diploied) 2	2.085
	CNS0095600	Silvery flower (diploied) 3	2.136
	CNS0095601	Golden flower (diploid) 1	1.079
	CNS0095602	Golden flower (diploid) 2	3.119
	CNS0095603	Golden flower (diploid) 3	1.998
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.495
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.261
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.963
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.199
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.047
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.707
	CNS0095610	Silvery flower (tetraploid) 1	4.866
	CNS0095611	Silvery flower (tetraploid) 2	3.574
	CNS0095612	Silvery flower (tetraploid) 3	1.961
	CNS0095613	Golden flower (tetraploid) 1	4.892
	CNS0095614	Golden flower (tetraploid) 2	5.205
	CNS0095615	Golden flower (tetraploid) 3	1.426
CRA001975	CRR073297	Stem 1	0.227
	CRR073298	Stem 2	0.172
	CRR073299	Stem 3	0.036
	CRR073300	Leaf 1	0.143
	CRR073301	Leaf 2	0.150
	CRR073302	Leaf 3	0.331
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.315
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	1.111
	CRR073307	Third green 2	0.663
	CRR073308	Third green 3	1.767
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.065
	CRR073312	Silver flowering 1	0.766
	CRR073313	Silver flowering 2	1.664
	CRR073314	Silver flowering 3	0.483
	CRR073315	Gold flowering 1	8.383
	CRR073316	Gold flowering 2	7.991
	CRR073317	Gold flowering 3	5.965
	CRR073318	Tawny withering 1	14.556
	CRR073319	Tawny withering 2	10.758
	CRR073320	Tawny withering 3	3.134