Gene detail

Detail information of GWHGAAZE013091

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_004294651.1	2.5956E-105	PREDICTED: E3 ubiquitin-protein ligase RING1-like [Fragaria vesca subsp. vesca]
Swissprot	tr\|P0CH30\|RING1_GOSHI	1E-33	E3 ubiquitin-protein ligase RING1
trEMBL	tr\|A5B8X0\|A5B8X0_VITVI	1E-101	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN82964.1}
TAIR10	AT2G39720.1	2E-60	RING-H2 finger C2A

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	96556600	96557427	+
GWHAAZE00000003	mRNA	96556600	96557427	+
GWHAAZE00000003	exon	96556600	96557110	+
GWHAAZE00000003	exon	96557144	96557427	+
GWHAAZE00000003	CDS	96556600	96557110	+
GWHAAZE00000003	CDS	96557144	96557427	+

Transcript Sequence
>GWHTAAZE013105 ATGTATTTCGATCATAGATCGAATGATTCAATTTCGAGAGCTCGTACCAACTTAAGGAGCGCTAATAGCGATCGACAAGTTTTTAATCCGGTTATAGTCCTCCGTGGTAACGGTGTTGGTGAGAGGGGGCATTACGAGTTATATTACGATGACAGTACCGGCTCCGGTCTCCGGCCATTACCTCCGACCATGTCGGAGTTTTTGATGGGGACTGGACTCGATCGCCTTCTCGATCAATTGGCTCATTTGGACCTTAATGGTGAAGGGGGATTTAATCCCCCACCCGCATCAAAGGCTGCAATTGAATCACTGCCAACTATTAAGATTGATTCGAGCCATGTGGGCACTGATTCGCATTGTGCTGTATGTAAAGAGGCATTTGAGATTGATTGCGAGGCTCGAGAAATGCCTTGTAAGCACATTTATCATGCGGATTGCATACTGCCATGGCTTTCTTTGAGGAATTCTTGCCCAGTTTGTCGCCATGAATTGGAGGCTGATGATAATGCAGGCGATGAAACTCCAGTGGGTCTTACGATATGGAGACTTCCTGGTGGTGGGTATGCGGTGGGGAGGTTTACTGGTGGCAGCGAGGCAGAGCCGCCTCTTGTTTTCACTGAAATGGATGGTGGGTTCAATGGTGGTGGTGCTCCAAGGAGGATTGCTTGGTCAAGAGGTGTGAATAGGGCAAGAGGGCGAAGCAGAATGGGACGAGCCTTTCGGAATTTCTTTTCCTACTTTCGAAGGTTTAGGATTTCATCACGGAATTTTAGTTTGGAAATTGGATTCAGGTGA

Network for GWHGAAZE013091

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13639.7	zf-RING_2	119	161	2.70E-09
PF06547.13	DUF1117	176	256	1.00E-28

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	RING
Ubiquitin Family	U-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.326
	SRR3591706	second leaf	3.452
	SRR3591707	mature leaf	1.766
	SRR3591708	Shoot apex	3.030
	SRR3591709	Stem	2.925
	SRR3591710	White floral bud	6.945
	SRR3591711	White flower	4.720
	SRR3591712	Green floral bud	5.096
	SRR3591713	Yellow flower	6.195
SRP173429	SRR8316895	Juvenile bud stage	4.746
	SRR8316896	Juvenile bud stage	6.801
	SRR8316897	Juvenile bud stage	2.214
	SRR8316894	Third green stage	1.128
	SRR8316900	Third green stage	2.788
	SRR8316901	Third green stage	4.015
	SRR8316898	Complete white stage	2.110
	SRR8316899	Complete white stage	3.342
	SRR8316903	Complete white stage	3.042
	SRR8316902	Silver flowering stage	2.145
	SRR8316904	Silver flowering stage	2.727
	SRR8316905	Silver flowering stage	1.438
	SRR8316906	Gold flowering stage	5.836
	SRR8316907	Gold flowering stage	4.533
	SRR8316908	Gold flowering stage	4.515
SRP132670	SRR6706286	Control	3.552
	SRR6706287	Light intensity 50%	3.482
	SRR6706288	Light intensity 20%	4.211
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.840
	CNS0095593	Slightly white alabastrum(diploid) 2	4.329
	CNS0095594	Slightly white alabastrum(diploid) 3	4.261
	CNS0095595	Whole white alabastrum(diploid) 2	4.498
	CNS0095596	Whole white alabastrum(diploid) 3	3.440
	CNS0095597	Whole white alabastrum(diploid) 4	5.651
	CNS0095598	Silvery flower (diploied) 1	3.162
	CNS0095599	Silvery flower (diploied) 2	4.262
	CNS0095600	Silvery flower (diploied) 3	5.248
	CNS0095601	Golden flower (diploid) 1	4.312
	CNS0095602	Golden flower (diploid) 2	4.482
	CNS0095603	Golden flower (diploid) 3	3.564
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.693
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.100
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.854
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.016
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.745
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.254
	CNS0095610	Silvery flower (tetraploid) 1	3.953
	CNS0095611	Silvery flower (tetraploid) 2	3.510
	CNS0095612	Silvery flower (tetraploid) 3	4.498
	CNS0095613	Golden flower (tetraploid) 1	3.491
	CNS0095614	Golden flower (tetraploid) 2	3.584
	CNS0095615	Golden flower (tetraploid) 3	7.308
CRA001975	CRR073297	Stem 1	1.735
	CRR073298	Stem 2	3.128
	CRR073299	Stem 3	3.424
	CRR073300	Leaf 1	5.185
	CRR073301	Leaf 2	3.928
	CRR073302	Leaf 3	3.575
	CRR073303	Juvenile bud 1	4.119
	CRR073304	Juvenile bud 2	3.820
	CRR073305	Juvenile bud 3	4.191
	CRR073306	Third green 1	3.005
	CRR073307	Third green 2	2.988
	CRR073308	Third green 3	3.352
	CRR073309	Second white 1	2.374
	CRR073310	Second white 2	2.401
	CRR073311	Second white 3	2.976
	CRR073312	Silver flowering 1	4.681
	CRR073313	Silver flowering 2	3.003
	CRR073314	Silver flowering 3	3.733
	CRR073315	Gold flowering 1	1.029
	CRR073316	Gold flowering 2	0.954
	CRR073317	Gold flowering 3	0.351
	CRR073318	Tawny withering 1	0.908
	CRR073319	Tawny withering 2	2.584
	CRR073320	Tawny withering 3	1.359