Gene detail

Detail information of GWHGAAZE013106

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002270322.1	0	PREDICTED: putative Dol-P-Glc:Glc(2)Man(9)GlcNAc(2)-PP-Dol alpha-1,2-glucosyltransferase isoform X1 [Vitis vinifera]
trEMBL	tr\|D7THP5\|D7THP5_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI30561.3}
TAIR10	AT5G02410.1	1E-161	DIE2/ALG10 family

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	96856305	96861813	-
GWHAAZE00000003	mRNA	96856305	96861813	-
GWHAAZE00000003	exon	96861724	96861813	-
GWHAAZE00000003	exon	96861542	96861630	-
GWHAAZE00000003	exon	96860981	96861314	-
GWHAAZE00000003	exon	96858789	96859062	-
GWHAAZE00000003	exon	96857544	96857681	-
GWHAAZE00000003	exon	96857258	96857462	-
GWHAAZE00000003	exon	96856665	96856921	-
GWHAAZE00000003	exon	96856305	96856564	-
GWHAAZE00000003	CDS	96861724	96861813	-
GWHAAZE00000003	CDS	96861542	96861630	-
GWHAAZE00000003	CDS	96860981	96861314	-
GWHAAZE00000003	CDS	96858789	96859062	-
GWHAAZE00000003	CDS	96857544	96857681	-
GWHAAZE00000003	CDS	96857258	96857462	-
GWHAAZE00000003	CDS	96856665	96856921	-
GWHAAZE00000003	CDS	96856305	96856564	-

Transcript Sequence
>GWHTAAZE013120 ATGGGTAAAACTAAAGTGGCATTGATTGTTGCTACCTGGGTCATCCCCATCTCCATTCTTGTTAATCACATTGTTTCGGACCCTTACATGGATGAGATATTCCATGTTCCTCAGGCTCAACAATACTGCAAGAATAATTTCAGCAGTTGGGATCCAATGATTACCACTCCCCCCGGCTTGTACTTTCTTTCACTTGTGCATGTTGCTTCTCTGTTTCCAGGCATGCTGTTTATGCAAACAGCCTCGTCATTTTCTGATGTTTGCTCCACTGCAATTCTACGCTCCATTAATGGTGTTTTGGCCGTAATTTGCAGCACTCTGGTTTATGAGATATTCATCTGCTTGAGGCCAGCTCTTGATGAAAGAAAGAAAACCCTGTATGCTGTTGTTCTTGCCCTATATCCCCTCCACTGGTTCTTCACTTTTCTTTACTACACAGACGTGGCGTCACTTACTCTAGTGCTTGCTATGTATTTACTGTGTCTGAAGAAGAAATACCTATTCAGTGCTTTGCTTGGGGCTTTGGCTGTACTATTACGGCAAACAAATATCATATGGATGCTTTTTGTCGCTTGCTCTGGGGTTATAGATTATACAACGGCTCATCAAAAAGATAAAATTCAATTAACTTACACGAATGAAGCAGATAAGAAAGATGGTAAGTTAGCCTCCAATAAAGGTGTCAAAGTAGGCTCCAACTTGAGAAAGCGTAGCGTTGGTAATCTTGCAGATGATGTTGATCATTCTATTACCGGAACCCATTCTGTTTCCGTACCTCATTCACCAGGTTTGTTTAATGAGATTCGGGACATCTTATTAACGTCGTGGCATCTAAAATGGCAGCTTTTGATTTCCTTTAGCCCCTTCTTTCTGGTGTTGGTGTCTTTTGTTGCTTTTGTTTTTTGGAATGGCAGTATAGTTCTCGGTGCAAAAGAATCTCATGCAGTCTCACCACATTTTGCTCAAATAATGTATTTTAGCCTGGTTTCCTCTTTGTTTATGGCTCCGGTTCACTTCAGTTTAAGTCAAGTCGGGGTTCTGGCATGTTCATTTTGGAAAAACAGGCCGCTTAGTTTCTTCCAGTGGTTTATGGCCTTAATTGCCGGTTTCCTTTCAGTGCATTTTTTCAGCGTAGCTCACCCCTATCTTCTTGCCGATAATCGACACTATCCATTTTATCTGTGGCGAAGGATCATCAAAGTTCATTGGTCGATGAAATACCTTTTGGTTCCACTTTATGTTTACTCGTGGTTTTCTATCTCCAATATTTTGGGTAAGCGTAGAGTTCAAGTCCATATATATCCTTTGAGCAAATCCTACAGTGTGACCAGTACATTGGCATCTGTACTCATAGCTATAATAGTTGACAACTATCAGAACTACTTGGCGAAAGTTCGAAAAAAGATATGGGTTTTGGCATATTTCTTGGCTTGTGCTGCTGTTCTTGCTCCTGCCCCGTTGATAGAGTTCAGATACTATACCATACCCTTCTTTTTCTTAATTCTCCATTCACCTGTTAATAATGACAGAATTTGGATCTTCATGGGGACTATATATACAGCAATTAATATCTTTACGATGACCATGTTCTTGTTTCGGCCATTTCAGTGGGACCACGAAATTGGGACCCAGAGGTTTATATGGTAG

Network for GWHGAAZE013106

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04922.13	DIE2_ALG10	25	501	7.70E-123

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03850	ALG10	Metabolic pathways	map01100
K03850	ALG10	N-Glycan biosynthesis	map00510

Gene Ontology

GO term	Ontology	Name
GO:0006488	biological_process	dolichol-linked oligosaccharide biosynthetic process
GO:0005789	cellular_component	endoplasmic reticulum membrane
GO:0004583	molecular_function	dolichyl-phosphate-glucose-glycolipid alpha-glucosyltransferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	19.817
	SRR3591706	second leaf	9.026
	SRR3591707	mature leaf	7.475
	SRR3591708	Shoot apex	14.519
	SRR3591709	Stem	17.453
	SRR3591710	White floral bud	14.462
	SRR3591711	White flower	14.879
	SRR3591712	Green floral bud	21.055
	SRR3591713	Yellow flower	12.057
SRP173429	SRR8316895	Juvenile bud stage	9.865
	SRR8316896	Juvenile bud stage	11.812
	SRR8316897	Juvenile bud stage	5.917
	SRR8316894	Third green stage	7.338
	SRR8316900	Third green stage	20.183
	SRR8316901	Third green stage	18.318
	SRR8316898	Complete white stage	7.594
	SRR8316899	Complete white stage	21.564
	SRR8316903	Complete white stage	13.300
	SRR8316902	Silver flowering stage	7.249
	SRR8316904	Silver flowering stage	13.014
	SRR8316905	Silver flowering stage	5.113
	SRR8316906	Gold flowering stage	14.904
	SRR8316907	Gold flowering stage	14.794
	SRR8316908	Gold flowering stage	15.235
SRP132670	SRR6706286	Control	8.920
	SRR6706287	Light intensity 50%	10.377
	SRR6706288	Light intensity 20%	11.251
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	13.418
	CNS0095593	Slightly white alabastrum(diploid) 2	13.211
	CNS0095594	Slightly white alabastrum(diploid) 3	12.000
	CNS0095595	Whole white alabastrum(diploid) 2	13.124
	CNS0095596	Whole white alabastrum(diploid) 3	12.174
	CNS0095597	Whole white alabastrum(diploid) 4	11.332
	CNS0095598	Silvery flower (diploied) 1	7.019
	CNS0095599	Silvery flower (diploied) 2	8.289
	CNS0095600	Silvery flower (diploied) 3	20.448
	CNS0095601	Golden flower (diploid) 1	7.890
	CNS0095602	Golden flower (diploid) 2	16.757
	CNS0095603	Golden flower (diploid) 3	16.149
	CNS0095604	Slightly white alabastrum(tetraploid) 1	14.040
	CNS0095605	Slightly white alabastrum(tetraploid) 2	10.302
	CNS0095606	Slightly white alabastrum(tetraploid) 3	17.712
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.864
	CNS0095608	Whole white alabastrum(tetraploid) 2	9.912
	CNS0095609	Whole white alabastrum(tetraploid) 3	13.467
	CNS0095610	Silvery flower (tetraploid) 1	14.575
	CNS0095611	Silvery flower (tetraploid) 2	16.807
	CNS0095612	Silvery flower (tetraploid) 3	11.838
	CNS0095613	Golden flower (tetraploid) 1	8.450
	CNS0095614	Golden flower (tetraploid) 2	12.990
	CNS0095615	Golden flower (tetraploid) 3	10.958
CRA001975	CRR073297	Stem 1	8.628
	CRR073298	Stem 2	7.836
	CRR073299	Stem 3	4.903
	CRR073300	Leaf 1	9.406
	CRR073301	Leaf 2	7.953
	CRR073302	Leaf 3	7.506
	CRR073303	Juvenile bud 1	10.201
	CRR073304	Juvenile bud 2	8.032
	CRR073305	Juvenile bud 3	10.863
	CRR073306	Third green 1	4.403
	CRR073307	Third green 2	4.770
	CRR073308	Third green 3	3.547
	CRR073309	Second white 1	4.644
	CRR073310	Second white 2	5.002
	CRR073311	Second white 3	4.958
	CRR073312	Silver flowering 1	3.306
	CRR073313	Silver flowering 2	3.234
	CRR073314	Silver flowering 3	1.703
	CRR073315	Gold flowering 1	2.720
	CRR073316	Gold flowering 2	4.356
	CRR073317	Gold flowering 3	3.376
	CRR073318	Tawny withering 1	7.483
	CRR073319	Tawny withering 2	8.727
	CRR073320	Tawny withering 3	8.719