Detail information of GWHGAAZE013109


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006419563.19.54203E-48hypothetical protein CICLE_v10006995mg [Citrus clementina]
Swissprottr|Q9SU30|CPR30_ARATH1E-35F-box protein CPR30
trEMBLtr|V4RG01|V4RG01_9ROSI4E-48Uncharacterized protein {ECO:0000313|EMBL:ESR32803.1}
TAIR10AT4G12560.29E-27F-box and associated interaction domains-containing protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene9692600796927137-
GWHAAZE00000003mRNA9692600796927137-
GWHAAZE00000003exon9692600796927137-
GWHAAZE00000003CDS9692600796927137-
Transcript Sequence

Network for GWHGAAZE013109

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF12937.8F-box-like7435.00E-08
PF07734.14FBA_12083362.00E-08
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf8.656
SRR3591706second leaf5.603
SRR3591707mature leaf6.649
SRR3591708Shoot apex9.220
SRR3591709Stem12.633
SRR3591710White floral bud11.771
SRR3591711White flower11.529
SRR3591712Green floral bud13.538
SRR3591713Yellow flower9.905
SRP173429 SRR8316895Juvenile bud stage 4.190
SRR8316896Juvenile bud stage 4.073
SRR8316897Juvenile bud stage 2.089
SRR8316894Third green stage 2.742
SRR8316900Third green stage 6.486
SRR8316901Third green stage 6.134
SRR8316898Complete white stage 4.090
SRR8316899Complete white stage 11.196
SRR8316903Complete white stage 5.974
SRR8316902Silver flowering stage3.975
SRR8316904Silver flowering stage5.350
SRR8316905Silver flowering stage1.585
SRR8316906Gold flowering stage 6.078
SRR8316907Gold flowering stage 7.222
SRR8316908Gold flowering stage 10.021
SRP132670SRR6706286Control3.795
SRR6706287Light intensity 50%4.755
SRR6706288Light intensity 20%4.791
CNP0000432CNS0095592Slightly white alabastrum(diploid) 14.343
CNS0095593Slightly white alabastrum(diploid) 25.350
CNS0095594Slightly white alabastrum(diploid) 33.803
CNS0095595Whole white alabastrum(diploid) 24.039
CNS0095596Whole white alabastrum(diploid) 32.589
CNS0095597Whole white alabastrum(diploid) 43.025
CNS0095598Silvery flower (diploied) 15.668
CNS0095599Silvery flower (diploied) 22.470
CNS0095600Silvery flower (diploied) 35.567
CNS0095601Golden flower (diploid) 13.202
CNS0095602Golden flower (diploid) 26.252
CNS0095603Golden flower (diploid) 36.793
CNS0095604Slightly white alabastrum(tetraploid) 17.226
CNS0095605Slightly white alabastrum(tetraploid) 23.358
CNS0095606Slightly white alabastrum(tetraploid) 39.712
CNS0095607Whole white alabastrum(tetraploid) 15.385
CNS0095608Whole white alabastrum(tetraploid) 23.369
CNS0095609Whole white alabastrum(tetraploid) 33.996
CNS0095610Silvery flower (tetraploid) 17.980
CNS0095611Silvery flower (tetraploid) 28.710
CNS0095612Silvery flower (tetraploid) 39.070
CNS0095613Golden flower (tetraploid) 16.741
CNS0095614Golden flower (tetraploid) 25.918
CNS0095615Golden flower (tetraploid) 38.615
CRA001975CRR073297Stem 12.733
CRR073298Stem 24.083
CRR073299Stem 31.521
CRR073300Leaf 13.613
CRR073301Leaf 22.542
CRR073302Leaf 30.703
CRR073303Juvenile bud 12.340
CRR073304Juvenile bud 21.604
CRR073305Juvenile bud 31.374
CRR073306Third green 10.493
CRR073307Third green 20.799
CRR073308Third green 31.458
CRR073309Second white 12.983
CRR073310Second white 23.087
CRR073311Second white 32.615
CRR073312Silver flowering 12.987
CRR073313Silver flowering 21.265
CRR073314Silver flowering 30.809
CRR073315Gold flowering 11.046
CRR073316Gold flowering 22.294
CRR073317Gold flowering 30.819
CRR073318Tawny withering 11.426
CRR073319Tawny withering 22.484
CRR073320Tawny withering 31.648