Detail information of GWHGAAZE013127


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010653505.17.3759E-115PREDICTED: F-box protein At2g39490-like [Vitis vinifera]
Swissprottr|Q5S4V7|FB129_ARATH2E-30F-box protein At2g39490
trEMBLtr|D7TQF4|D7TQF4_VITVI3E-115Putative uncharacterized protein {ECO:0000313|EMBL:CBI32674.3}
TAIR10AT2G39490.17E-24F-box family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene9722480897227241-
GWHAAZE00000003mRNA9722480897227241-
GWHAAZE00000003exon9722480897225206-
GWHAAZE00000003exon9722560997225767-
GWHAAZE00000003exon9722642697227241-
GWHAAZE00000003CDS9722642697227241-
GWHAAZE00000003CDS9722560997225767-
GWHAAZE00000003CDS9722480897225206-
Transcript Sequence

Network for GWHGAAZE013127

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00646.34F-box8460.00024
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf1.015
SRR3591706second leaf2.355
SRR3591707mature leaf6.974
SRR3591708Shoot apex1.098
SRR3591709Stem1.099
SRR3591710White floral bud0.143
SRR3591711White flower1.037
SRR3591712Green floral bud0.869
SRR3591713Yellow flower0.225
SRP173429 SRR8316895Juvenile bud stage 0.474
SRR8316896Juvenile bud stage 0.762
SRR8316897Juvenile bud stage 0.217
SRR8316894Third green stage 0.564
SRR8316900Third green stage 0.964
SRR8316901Third green stage 0.284
SRR8316898Complete white stage 2.625
SRR8316899Complete white stage 0.761
SRR8316903Complete white stage 4.749
SRR8316902Silver flowering stage6.287
SRR8316904Silver flowering stage11.893
SRR8316905Silver flowering stage5.559
SRR8316906Gold flowering stage 11.374
SRR8316907Gold flowering stage 18.442
SRR8316908Gold flowering stage 11.741
SRP132670SRR6706286Control0.071
SRR6706287Light intensity 50%0.116
SRR6706288Light intensity 20%0.109
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.207
CNS0095593Slightly white alabastrum(diploid) 20.579
CNS0095594Slightly white alabastrum(diploid) 30.345
CNS0095595Whole white alabastrum(diploid) 20.336
CNS0095596Whole white alabastrum(diploid) 30.120
CNS0095597Whole white alabastrum(diploid) 40.534
CNS0095598Silvery flower (diploied) 11.549
CNS0095599Silvery flower (diploied) 21.967
CNS0095600Silvery flower (diploied) 313.566
CNS0095601Golden flower (diploid) 10.913
CNS0095602Golden flower (diploid) 29.094
CNS0095603Golden flower (diploid) 37.252
CNS0095604Slightly white alabastrum(tetraploid) 10.942
CNS0095605Slightly white alabastrum(tetraploid) 20.771
CNS0095606Slightly white alabastrum(tetraploid) 32.538
CNS0095607Whole white alabastrum(tetraploid) 10.288
CNS0095608Whole white alabastrum(tetraploid) 20.134
CNS0095609Whole white alabastrum(tetraploid) 30.551
CNS0095610Silvery flower (tetraploid) 19.473
CNS0095611Silvery flower (tetraploid) 24.743
CNS0095612Silvery flower (tetraploid) 31.294
CNS0095613Golden flower (tetraploid) 112.931
CNS0095614Golden flower (tetraploid) 216.053
CNS0095615Golden flower (tetraploid) 322.728
CRA001975CRR073297Stem 10.746
CRR073298Stem 20.874
CRR073299Stem 30.150
CRR073300Leaf 10.865
CRR073301Leaf 20.339
CRR073302Leaf 30.419
CRR073303Juvenile bud 10.029
CRR073304Juvenile bud 20.079
CRR073305Juvenile bud 30.266
CRR073306Third green 11.561
CRR073307Third green 21.628
CRR073308Third green 31.147
CRR073309Second white 10.698
CRR073310Second white 20.293
CRR073311Second white 32.045
CRR073312Silver flowering 10.358
CRR073313Silver flowering 20.179
CRR073314Silver flowering 30.042
CRR073315Gold flowering 11.237
CRR073316Gold flowering 21.557
CRR073317Gold flowering 30.256
CRR073318Tawny withering 10.769
CRR073319Tawny withering 22.865
CRR073320Tawny withering 31.094