Gene detail

Detail information of GWHGAAZE013128

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011077433.1	5.3009E-101	PREDICTED: 60S ribosomal protein L23a [Sesamum indicum]
Swissprot	tr\|Q9AT35\|RL23A_DAUCA	3E-85	60S ribosomal protein L23a
trEMBL	tr\|A0A067FK20\|A0A067FK20_CITSI	9E-91	Uncharacterized protein {ECO:0000313\|EMBL:KDO67734.1}
TAIR10	AT3G55280.3	4E-43	ribosomal protein L23AB

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	97240257	97243294	+
GWHAAZE00000003	mRNA	97240257	97243294	+
GWHAAZE00000003	exon	97240257	97240272	+
GWHAAZE00000003	exon	97241824	97242190	+
GWHAAZE00000003	exon	97242825	97243294	+
GWHAAZE00000003	CDS	97240257	97240272	+
GWHAAZE00000003	CDS	97241824	97242190	+
GWHAAZE00000003	CDS	97242825	97242909	+
GWHAAZE00000003	three_prime_UTR	97242910	97243294	+

Transcript Sequence
>GWHTAAZE013142 ATGGCTCCTGCTAAAGCTGACCCCACAAAAAAGTCGGACCCGAAGGCCCAAGCCTTGAAAGCCGCCAAGGCTGTGAAATCGGGCTCCTCAACCTTTAAGAAAAAGTCTAAGAAGGTACGAACAAAAGTTACGTTTCATCGCCCGAGGACATTGAAGAAAGATAGAAACCCCAAGTACCCTCGCATCAGTGCACCCCCAAGGAACAAGCTCGACCACTACCAGATCCTTAAATATCCACTCACTACTGAATCGGCAATGAAGAAGATTGAAGACAACAACACCCTTGTCTTCATTGTTGATATCCGTGCCGACAAGAAGAAGATTAAAGATGCTGTCAAGAAGATGTATGACATTCAGACCAAGAAAGTTAACACACTCATCAGGCCTGATGGGACTAAGAAAGCCTACGTTAGGCTGACACCCGACTATGATGCACTTGACGTGGCCAACAAAATCGGGATTATCTAAGATTATAGTTATCAGTTAAAAGTTTCAGGTTCAATGTTTTTCTGTAGTATTTTTGTGTTCTCGACTTCAAGAATCGGTTTCAACTGAACTAGATTTTAATTTCACTTTGGGATTAAACTTTTGAGATATTCATACATTCTGTTTACGGCTTTGGTAAATTATGTTGCTGTTTAGCTTTTAAGCTTCTTATCTGCAGGATTTTGTATTGGTGATTTTGTTTGCTAATTGCTTAGATTTTATCCCTACATTGGCTCAGAAATACTCCTATATTGGATTACAATTGTCACTTATGATTGCTATTTGTATGAGGTGCTCGTGTTAATCACTTGATAACATTTTTTATGGACTTTTTCAAAAATGAATTAAAAAATTATTTAAGGAAATG

Network for GWHGAAZE013128

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03939.14	Ribosomal_L23eN	15	65	1.60E-18
PF00276.21	Ribosomal_L23	75	136	2.00E-14

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02893	RP-L23Ae, RPL23A	Ribosome	map03010

Gene Ontology

GO term	Ontology	Name
GO:0006412	biological_process	translation
GO:0005840	cellular_component	ribosome
GO:0003735	molecular_function	structural constituent of ribosome

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	456.536
	SRR3591706	second leaf	197.433
	SRR3591707	mature leaf	121.535
	SRR3591708	Shoot apex	558.829
	SRR3591709	Stem	235.939
	SRR3591710	White floral bud	215.577
	SRR3591711	White flower	273.838
	SRR3591712	Green floral bud	406.591
	SRR3591713	Yellow flower	168.288
SRP173429	SRR8316895	Juvenile bud stage	237.620
	SRR8316896	Juvenile bud stage	330.242
	SRR8316897	Juvenile bud stage	190.232
	SRR8316894	Third green stage	125.204
	SRR8316900	Third green stage	432.906
	SRR8316901	Third green stage	440.541
	SRR8316898	Complete white stage	111.909
	SRR8316899	Complete white stage	355.594
	SRR8316903	Complete white stage	137.477
	SRR8316902	Silver flowering stage	113.084
	SRR8316904	Silver flowering stage	125.005
	SRR8316905	Silver flowering stage	47.016
	SRR8316906	Gold flowering stage	138.418
	SRR8316907	Gold flowering stage	165.077
	SRR8316908	Gold flowering stage	182.755
SRP132670	SRR6706286	Control	482.331
	SRR6706287	Light intensity 50%	451.895
	SRR6706288	Light intensity 20%	467.422
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	396.494
	CNS0095593	Slightly white alabastrum(diploid) 2	465.115
	CNS0095594	Slightly white alabastrum(diploid) 3	378.523
	CNS0095595	Whole white alabastrum(diploid) 2	333.547
	CNS0095596	Whole white alabastrum(diploid) 3	387.824
	CNS0095597	Whole white alabastrum(diploid) 4	279.128
	CNS0095598	Silvery flower (diploied) 1	219.362
	CNS0095599	Silvery flower (diploied) 2	227.252
	CNS0095600	Silvery flower (diploied) 3	218.269
	CNS0095601	Golden flower (diploid) 1	170.457
	CNS0095602	Golden flower (diploid) 2	183.958
	CNS0095603	Golden flower (diploid) 3	172.675
	CNS0095604	Slightly white alabastrum(tetraploid) 1	358.579
	CNS0095605	Slightly white alabastrum(tetraploid) 2	382.009
	CNS0095606	Slightly white alabastrum(tetraploid) 3	390.376
	CNS0095607	Whole white alabastrum(tetraploid) 1	218.850
	CNS0095608	Whole white alabastrum(tetraploid) 2	189.802
	CNS0095609	Whole white alabastrum(tetraploid) 3	312.549
	CNS0095610	Silvery flower (tetraploid) 1	192.291
	CNS0095611	Silvery flower (tetraploid) 2	170.949
	CNS0095612	Silvery flower (tetraploid) 3	122.029
	CNS0095613	Golden flower (tetraploid) 1	111.748
	CNS0095614	Golden flower (tetraploid) 2	145.020
	CNS0095615	Golden flower (tetraploid) 3	98.074
CRA001975	CRR073297	Stem 1	301.012
	CRR073298	Stem 2	290.423
	CRR073299	Stem 3	344.306
	CRR073300	Leaf 1	275.731
	CRR073301	Leaf 2	311.831
	CRR073302	Leaf 3	334.271
	CRR073303	Juvenile bud 1	292.316
	CRR073304	Juvenile bud 2	251.281
	CRR073305	Juvenile bud 3	251.545
	CRR073306	Third green 1	73.127
	CRR073307	Third green 2	75.935
	CRR073308	Third green 3	81.466
	CRR073309	Second white 1	82.830
	CRR073310	Second white 2	76.203
	CRR073311	Second white 3	48.000
	CRR073312	Silver flowering 1	62.131
	CRR073313	Silver flowering 2	69.719
	CRR073314	Silver flowering 3	61.390
	CRR073315	Gold flowering 1	147.311
	CRR073316	Gold flowering 2	167.886
	CRR073317	Gold flowering 3	140.513
	CRR073318	Tawny withering 1	268.562
	CRR073319	Tawny withering 2	294.455
	CRR073320	Tawny withering 3	307.670