Gene detail

Detail information of GWHGAAZE013132

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009764611.1	6.13215E-49	PREDICTED: F-box/kelch-repeat protein At3g06240-like [Nicotiana sylvestris]
Swissprot	tr\|Q8GXC7\|FBK50_ARATH	1E-35	F-box/kelch-repeat protein At3g06240
trEMBL	tr\|M5WIQ9\|M5WIQ9_PRUPE	1E-48	Uncharacterized protein {ECO:0000313\|EMBL:EMJ13161.1}
TAIR10	AT3G06240.1	1E-27	F-box family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	97353693	97354847	+
GWHAAZE00000003	mRNA	97353693	97354847	+
GWHAAZE00000003	exon	97353693	97354847	+
GWHAAZE00000003	CDS	97353693	97354847	+

Transcript Sequence
>GWHTAAZE013146 ATGGAAGTTGATCAACCGCTGTACCTTCCCCACGAAATCTTGGTCGGAATACTTTCAAGACTACCGGTCAAGTCTCTTTTGCGATCCCGATGCGTTTGCAAGCGATGGTACTCTTTGATCTCTGATCCCCAATTCGTGACCGTACACCTCAGTCAATCGTCAAAACAAACCGAGAAAATCCTCCTTTCGCCCACGGCACACTGGTCCGTAATGCACTTTGACTCAATAGACTCAAAAGCTTCTTGTATTCAACTTGAATTAGAGAGACTTGACTTTCCTCCCGAGATTCGAGGATCTAGCGAACCTGTCATTGGCTTTGGTTCTTGCAATGGCTTAGTGCTTTTAGTCGGTTCCCACGAGAATTTGATCTTGTGGAACCCATCTACTCGAGAGTGTAGGGAAATTTCGTATCCTCACAGTACAAAGTATAGATATGACACAAGGATATATGGACTTGGCTATGATTCCATTAACGATGATTATAAGTTGGGAGTCGTTTTTTTCACAGATGAGGATCGCCGGTCCTATGTGATTTGCGTATTCTCACTTAAAACCAACCGGTGGAGGAAAAAGATCGCCAGCTGCCCATATTGGGGTTGCGAGGTTGACCCAGAAACGGCGGCGACCGTGGTGAACGGTGCGCTACACTGGGTGATGATTGATTATGACAATGGGGATTTGCACAAAATTGTTGGTTTCGATTTGGCGACCGAGAATTTGAAAGAAATGCCACTTCCGACATGTTTTGAAACTCGGGACGGTGACGGGGACTATTTTATGGGGGGTTTGGGGGGTTGCCTTTGTTTAGTTGGCGGGGTTTGTAATGGTGTTACGAAGCCTATTGAGGTATGGGTGATGAAGGAATATGGGGTGAAGGAATCTTGGACAAATCTGATAAATTTTACTTACGAAGAGAATTTGCCTTGGATGGGGCCGTTGGCTCTTACGAGTAGTGGCGATATTTTGGTGGAGCTAGAGATGGAGAATAAATTAATGGTTGTTAATAGTGAAACAAAAGCGATTAGAGAGATATCAATTGATACGAAGCAACATACTGTACTATTTGCGCATGTGGAGAGCTTAGTGTCTGTCTATGGTAGTGGTAATAATGGTGCGAGTAGAAGAAGATTAAGGAAAAGGAAAATGTTGGACTGA

Network for GWHGAAZE013132

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12937.8	F-box-like	7	44	1.70E-11
PF07734.14	FBA_1	211	341	2.70E-08

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.919
	SRR3591706	second leaf	3.405
	SRR3591707	mature leaf	3.803
	SRR3591708	Shoot apex	5.857
	SRR3591709	Stem	5.847
	SRR3591710	White floral bud	8.210
	SRR3591711	White flower	7.262
	SRR3591712	Green floral bud	12.940
	SRR3591713	Yellow flower	1.714
SRP173429	SRR8316895	Juvenile bud stage	4.216
	SRR8316896	Juvenile bud stage	5.758
	SRR8316897	Juvenile bud stage	2.631
	SRR8316894	Third green stage	1.927
	SRR8316900	Third green stage	6.011
	SRR8316901	Third green stage	6.671
	SRR8316898	Complete white stage	1.693
	SRR8316899	Complete white stage	12.566
	SRR8316903	Complete white stage	2.635
	SRR8316902	Silver flowering stage	1.528
	SRR8316904	Silver flowering stage	2.996
	SRR8316905	Silver flowering stage	0.691
	SRR8316906	Gold flowering stage	2.043
	SRR8316907	Gold flowering stage	0.846
	SRR8316908	Gold flowering stage	1.754
SRP132670	SRR6706286	Control	6.432
	SRR6706287	Light intensity 50%	5.930
	SRR6706288	Light intensity 20%	7.052
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.509
	CNS0095593	Slightly white alabastrum(diploid) 2	5.396
	CNS0095594	Slightly white alabastrum(diploid) 3	3.127
	CNS0095595	Whole white alabastrum(diploid) 2	4.666
	CNS0095596	Whole white alabastrum(diploid) 3	5.097
	CNS0095597	Whole white alabastrum(diploid) 4	6.101
	CNS0095598	Silvery flower (diploied) 1	9.639
	CNS0095599	Silvery flower (diploied) 2	4.010
	CNS0095600	Silvery flower (diploied) 3	4.557
	CNS0095601	Golden flower (diploid) 1	6.287
	CNS0095602	Golden flower (diploid) 2	4.703
	CNS0095603	Golden flower (diploid) 3	4.141
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.806
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.886
	CNS0095606	Slightly white alabastrum(tetraploid) 3	9.262
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.726
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.662
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.952
	CNS0095610	Silvery flower (tetraploid) 1	4.971
	CNS0095611	Silvery flower (tetraploid) 2	5.634
	CNS0095612	Silvery flower (tetraploid) 3	6.471
	CNS0095613	Golden flower (tetraploid) 1	2.944
	CNS0095614	Golden flower (tetraploid) 2	2.945
	CNS0095615	Golden flower (tetraploid) 3	0.763
CRA001975	CRR073297	Stem 1	9.343
	CRR073298	Stem 2	9.891
	CRR073299	Stem 3	9.375
	CRR073300	Leaf 1	8.809
	CRR073301	Leaf 2	7.437
	CRR073302	Leaf 3	8.550
	CRR073303	Juvenile bud 1	8.416
	CRR073304	Juvenile bud 2	2.586
	CRR073305	Juvenile bud 3	6.402
	CRR073306	Third green 1	0.055
	CRR073307	Third green 2	0.227
	CRR073308	Third green 3	0.542
	CRR073309	Second white 1	0.085
	CRR073310	Second white 2	0.381
	CRR073311	Second white 3	0.265
	CRR073312	Silver flowering 1	0.041
	CRR073313	Silver flowering 2	0.315
	CRR073314	Silver flowering 3	0.192
	CRR073315	Gold flowering 1	4.729
	CRR073316	Gold flowering 2	7.510
	CRR073317	Gold flowering 3	5.591
	CRR073318	Tawny withering 1	4.172
	CRR073319	Tawny withering 2	5.027
	CRR073320	Tawny withering 3	4.083