Detail information of GWHGAAZE013133


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007034258.15.70715E-20Ubiquitin-protein ligase, putative [Theobroma cacao]
Swissprottr|Q9LUU3|FBK58_ARATH3E-12Putative F-box/kelch-repeat protein At3g17280
trEMBLtr|A0A061ESD4|A0A061ESD4_THECC2E-20Ubiquitin-protein ligase, putative {ECO:0000313|EMBL:EOY05184.1}
TAIR10AT3G17280.15E-11F-box and associated interaction domains-containing protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene9737556097375949+
GWHAAZE00000003mRNA9737556097375949+
GWHAAZE00000003exon9737556097375949+
GWHAAZE00000003CDS9737556097375949+
Transcript Sequence

Network for GWHGAAZE013133

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00646.34F-box9477.50E-10
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf2.721
SRR3591706second leaf2.353
SRR3591707mature leaf4.559
SRR3591708Shoot apex3.846
SRR3591709Stem1.903
SRR3591710White floral bud0.992
SRR3591711White flower1.604
SRR3591712Green floral bud3.943
SRR3591713Yellow flower0.830
SRP173429 SRR8316895Juvenile bud stage 1.242
SRR8316896Juvenile bud stage 0.904
SRR8316897Juvenile bud stage 0.357
SRR8316894Third green stage 2.170
SRR8316900Third green stage 3.177
SRR8316901Third green stage 2.506
SRR8316898Complete white stage 0.498
SRR8316899Complete white stage 3.194
SRR8316903Complete white stage 0.224
SRR8316902Silver flowering stage0.109
SRR8316904Silver flowering stage1.467
SRR8316905Silver flowering stage0.245
SRR8316906Gold flowering stage 1.424
SRR8316907Gold flowering stage 0.469
SRR8316908Gold flowering stage 0.824
SRP132670SRR6706286Control0.418
SRR6706287Light intensity 50%0.878
SRR6706288Light intensity 20%0.683
CNP0000432CNS0095592Slightly white alabastrum(diploid) 11.925
CNS0095593Slightly white alabastrum(diploid) 20.897
CNS0095594Slightly white alabastrum(diploid) 31.730
CNS0095595Whole white alabastrum(diploid) 20.672
CNS0095596Whole white alabastrum(diploid) 31.370
CNS0095597Whole white alabastrum(diploid) 40.519
CNS0095598Silvery flower (diploied) 10.600
CNS0095599Silvery flower (diploied) 20.945
CNS0095600Silvery flower (diploied) 30.813
CNS0095601Golden flower (diploid) 11.506
CNS0095602Golden flower (diploid) 21.412
CNS0095603Golden flower (diploid) 32.226
CNS0095604Slightly white alabastrum(tetraploid) 11.566
CNS0095605Slightly white alabastrum(tetraploid) 21.305
CNS0095606Slightly white alabastrum(tetraploid) 31.447
CNS0095607Whole white alabastrum(tetraploid) 11.022
CNS0095608Whole white alabastrum(tetraploid) 20.595
CNS0095609Whole white alabastrum(tetraploid) 31.084
CNS0095610Silvery flower (tetraploid) 10.774
CNS0095611Silvery flower (tetraploid) 21.376
CNS0095612Silvery flower (tetraploid) 30.432
CNS0095613Golden flower (tetraploid) 10.094
CNS0095614Golden flower (tetraploid) 20.828
CNS0095615Golden flower (tetraploid) 30.092
CRA001975CRR073297Stem 13.085
CRR073298Stem 21.244
CRR073299Stem 30.193
CRR073300Leaf 10.712
CRR073301Leaf 21.359
CRR073302Leaf 30.626
CRR073303Juvenile bud 10.310
CRR073304Juvenile bud 20.067
CRR073305Juvenile bud 30.497
CRR073306Third green 10.000
CRR073307Third green 20.000
CRR073308Third green 30.000
CRR073309Second white 10.000
CRR073310Second white 20.000
CRR073311Second white 30.106
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.000
CRR073316Gold flowering 20.023
CRR073317Gold flowering 30.000
CRR073318Tawny withering 10.596
CRR073319Tawny withering 20.781
CRR073320Tawny withering 30.426