Detail information of GWHGAAZE013136


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_004302801.10PREDICTED: probable pectate lyase 4-like [Fragaria vesca subsp. vesca]
Swissprottr|Q9C8G4|PLY4_ARATH2E-51Probable pectate lyase 4 (Precursor)
trEMBLtr|V4S4B8|V4S4B8_9ROSI0Pectate lyase {ECO:0000256|RuleBase:RU361123}
TAIR10AT3G55140.12E-151Pectin lyase-like superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene9741490497418902-
GWHAAZE00000003mRNA9741490497418902-
GWHAAZE00000003exon9741490497415143-
GWHAAZE00000003exon9741602297416090-
GWHAAZE00000003exon9741620497416414-
GWHAAZE00000003exon9741693697417287-
GWHAAZE00000003exon9741862997418902-
GWHAAZE00000003CDS9741862997418902-
GWHAAZE00000003CDS9741693697417287-
GWHAAZE00000003CDS9741620497416414-
GWHAAZE00000003CDS9741602297416090-
GWHAAZE00000003CDS9741490497415143-
Transcript Sequence

Network for GWHGAAZE013136

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00544.20Pectate_lyase_41222853.40E-26
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K01728pel Metabolic pathways map01100
Pentose and glucuronate interconversionsmap00040
Quorum sensingmap02024

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf27.784
SRR3591706second leaf30.110
SRR3591707mature leaf44.608
SRR3591708Shoot apex17.822
SRR3591709Stem37.902
SRR3591710White floral bud32.576
SRR3591711White flower30.261
SRR3591712Green floral bud41.269
SRR3591713Yellow flower8.618
SRP173429 SRR8316895Juvenile bud stage 22.228
SRR8316896Juvenile bud stage 22.915
SRR8316897Juvenile bud stage 12.110
SRR8316894Third green stage 14.900
SRR8316900Third green stage 48.478
SRR8316901Third green stage 49.426
SRR8316898Complete white stage 12.849
SRR8316899Complete white stage 85.910
SRR8316903Complete white stage 19.723
SRR8316902Silver flowering stage6.524
SRR8316904Silver flowering stage10.638
SRR8316905Silver flowering stage3.301
SRR8316906Gold flowering stage 8.162
SRR8316907Gold flowering stage 9.901
SRR8316908Gold flowering stage 9.614
SRP132670SRR6706286Control58.082
SRR6706287Light intensity 50%63.208
SRR6706288Light intensity 20%65.553
CNP0000432CNS0095592Slightly white alabastrum(diploid) 124.665
CNS0095593Slightly white alabastrum(diploid) 229.876
CNS0095594Slightly white alabastrum(diploid) 322.826
CNS0095595Whole white alabastrum(diploid) 230.871
CNS0095596Whole white alabastrum(diploid) 318.583
CNS0095597Whole white alabastrum(diploid) 426.182
CNS0095598Silvery flower (diploied) 140.366
CNS0095599Silvery flower (diploied) 230.005
CNS0095600Silvery flower (diploied) 329.117
CNS0095601Golden flower (diploid) 130.640
CNS0095602Golden flower (diploid) 227.382
CNS0095603Golden flower (diploid) 329.254
CNS0095604Slightly white alabastrum(tetraploid) 128.171
CNS0095605Slightly white alabastrum(tetraploid) 221.316
CNS0095606Slightly white alabastrum(tetraploid) 352.349
CNS0095607Whole white alabastrum(tetraploid) 123.394
CNS0095608Whole white alabastrum(tetraploid) 218.273
CNS0095609Whole white alabastrum(tetraploid) 337.513
CNS0095610Silvery flower (tetraploid) 143.018
CNS0095611Silvery flower (tetraploid) 239.021
CNS0095612Silvery flower (tetraploid) 326.400
CNS0095613Golden flower (tetraploid) 119.584
CNS0095614Golden flower (tetraploid) 229.088
CNS0095615Golden flower (tetraploid) 36.441
CRA001975CRR073297Stem 133.077
CRR073298Stem 226.863
CRR073299Stem 328.229
CRR073300Leaf 138.602
CRR073301Leaf 240.136
CRR073302Leaf 334.823
CRR073303Juvenile bud 148.140
CRR073304Juvenile bud 235.742
CRR073305Juvenile bud 351.099
CRR073306Third green 18.736
CRR073307Third green 26.338
CRR073308Third green 310.428
CRR073309Second white 18.023
CRR073310Second white 24.216
CRR073311Second white 32.517
CRR073312Silver flowering 13.130
CRR073313Silver flowering 23.335
CRR073314Silver flowering 32.891
CRR073315Gold flowering 121.987
CRR073316Gold flowering 223.858
CRR073317Gold flowering 316.744
CRR073318Tawny withering 133.464
CRR073319Tawny withering 232.196
CRR073320Tawny withering 334.177