Detail information of GWHGAAZE013139


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007027141.10Lipin family protein isoform 1 [Theobroma cacao]
Swissprottr|Q9SF47|PAH1_ARATH0Phosphatidate phosphatase PAH1
trEMBLtr|A0A061ESL5|A0A061ESL5_THECC0Lipin family protein isoform 1 {ECO:0000313|EMBL:EOY07643.1}
TAIR10AT3G09560.31E-145Lipin family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene9743283597459109-
GWHAAZE00000003mRNA9743283597459109-
GWHAAZE00000003exon9745795197459109-
GWHAAZE00000003exon9745660497457193-
GWHAAZE00000003exon9745583197455904-
GWHAAZE00000003exon9745523797455321-
GWHAAZE00000003exon9745421297454298-
GWHAAZE00000003exon9745354797453619-
GWHAAZE00000003exon9745322697453269-
GWHAAZE00000003exon9745301397453141-
GWHAAZE00000003exon9745277597452873-
GWHAAZE00000003exon9744261097442828-
GWHAAZE00000003exon9744217697442271-
GWHAAZE00000003exon9743957397439646-
GWHAAZE00000003exon9743898697439088-
GWHAAZE00000003exon9743867597438785-
GWHAAZE00000003exon9743831897438394-
GWHAAZE00000003exon9743758897437654-
GWHAAZE00000003exon9743704997437114-
GWHAAZE00000003exon9743637997436486-
GWHAAZE00000003exon9743610797436237-
GWHAAZE00000003exon9743532697435392-
GWHAAZE00000003exon9743515597435210-
GWHAAZE00000003exon9743497897435047-
GWHAAZE00000003exon9743419997434269-
GWHAAZE00000003exon9743283597433249-
GWHAAZE00000003CDS9745795197459109-
GWHAAZE00000003CDS9745660497457193-
GWHAAZE00000003CDS9745583197455904-
GWHAAZE00000003CDS9745523797455321-
GWHAAZE00000003CDS9745421297454298-
GWHAAZE00000003CDS9745354797453619-
GWHAAZE00000003CDS9745322697453269-
GWHAAZE00000003CDS9745301397453141-
GWHAAZE00000003CDS9745277597452873-
GWHAAZE00000003CDS9744261097442828-
GWHAAZE00000003CDS9744217697442271-
GWHAAZE00000003CDS9743957397439646-
GWHAAZE00000003CDS9743898697439088-
GWHAAZE00000003CDS9743867597438785-
GWHAAZE00000003CDS9743831897438394-
GWHAAZE00000003CDS9743758897437654-
GWHAAZE00000003CDS9743704997437114-
GWHAAZE00000003CDS9743637997436486-
GWHAAZE00000003CDS9743610797436237-
GWHAAZE00000003CDS9743532697435392-
GWHAAZE00000003CDS9743515597435210-
GWHAAZE00000003CDS9743497897435047-
GWHAAZE00000003CDS9743419997434269-
GWHAAZE00000003CDS9743283597433249-
Transcript Sequence

Network for GWHGAAZE013139

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04571.15Lipin_N1931.10E-28
PF16876.6Lipin_mid3884922.00E-15
PF08235.14LNS25527736.60E-94
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K15728LPIN Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Glycerolipid metabolismmap00561
Glycerophospholipid metabolismmap00564
mTOR signaling pathwaymap04150

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf5.513
SRR3591706second leaf2.008
SRR3591707mature leaf2.413
SRR3591708Shoot apex4.924
SRR3591709Stem7.660
SRR3591710White floral bud4.737
SRR3591711White flower4.657
SRR3591712Green floral bud7.751
SRR3591713Yellow flower2.160
SRP173429 SRR8316895Juvenile bud stage 5.586
SRR8316896Juvenile bud stage 8.653
SRR8316897Juvenile bud stage 3.186
SRR8316894Third green stage 3.904
SRR8316900Third green stage 10.529
SRR8316901Third green stage 9.579
SRR8316898Complete white stage 2.126
SRR8316899Complete white stage 10.531
SRR8316903Complete white stage 3.716
SRR8316902Silver flowering stage1.601
SRR8316904Silver flowering stage2.491
SRR8316905Silver flowering stage1.242
SRR8316906Gold flowering stage 2.377
SRR8316907Gold flowering stage 2.364
SRR8316908Gold flowering stage 1.602
SRP132670SRR6706286Control4.577
SRR6706287Light intensity 50%4.467
SRR6706288Light intensity 20%5.214
CNP0000432CNS0095592Slightly white alabastrum(diploid) 17.931
CNS0095593Slightly white alabastrum(diploid) 27.375
CNS0095594Slightly white alabastrum(diploid) 37.548
CNS0095595Whole white alabastrum(diploid) 28.178
CNS0095596Whole white alabastrum(diploid) 38.702
CNS0095597Whole white alabastrum(diploid) 47.263
CNS0095598Silvery flower (diploied) 17.071
CNS0095599Silvery flower (diploied) 25.231
CNS0095600Silvery flower (diploied) 35.803
CNS0095601Golden flower (diploid) 15.816
CNS0095602Golden flower (diploid) 25.356
CNS0095603Golden flower (diploid) 35.878
CNS0095604Slightly white alabastrum(tetraploid) 16.449
CNS0095605Slightly white alabastrum(tetraploid) 25.437
CNS0095606Slightly white alabastrum(tetraploid) 31.856
CNS0095607Whole white alabastrum(tetraploid) 15.526
CNS0095608Whole white alabastrum(tetraploid) 24.785
CNS0095609Whole white alabastrum(tetraploid) 34.948
CNS0095610Silvery flower (tetraploid) 10.513
CNS0095611Silvery flower (tetraploid) 20.819
CNS0095612Silvery flower (tetraploid) 30.444
CNS0095613Golden flower (tetraploid) 10.351
CNS0095614Golden flower (tetraploid) 20.132
CNS0095615Golden flower (tetraploid) 30.444
CRA001975CRR073297Stem 14.792
CRR073298Stem 24.447
CRR073299Stem 32.871
CRR073300Leaf 15.755
CRR073301Leaf 24.397
CRR073302Leaf 33.906
CRR073303Juvenile bud 12.472
CRR073304Juvenile bud 21.496
CRR073305Juvenile bud 33.679
CRR073306Third green 10.525
CRR073307Third green 20.352
CRR073308Third green 30.873
CRR073309Second white 10.881
CRR073310Second white 20.477
CRR073311Second white 30.366
CRR073312Silver flowering 10.522
CRR073313Silver flowering 20.449
CRR073314Silver flowering 30.602
CRR073315Gold flowering 11.520
CRR073316Gold flowering 22.243
CRR073317Gold flowering 30.975
CRR073318Tawny withering 14.065
CRR073319Tawny withering 22.938
CRR073320Tawny withering 33.420