Gene detail

Detail information of GWHGAAZE013154

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011094756.1	8.3883E-106	PREDICTED: glutathione S-transferase L3-like [Sesamum indicum]
Swissprot	tr\|Q9LZ06\|GSTL3_ARATH	5E-95	Glutathione S-transferase L3
trEMBL	tr\|D7TQB6\|D7TQB6_VITVI	2E-104	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI32636.3}
TAIR10	AT5G02790.1	2E-76	Glutathione S-transferase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	97672985	97678129	+
GWHAAZE00000003	mRNA	97672985	97678129	+
GWHAAZE00000003	exon	97672985	97673016	+
GWHAAZE00000003	exon	97673351	97673425	+
GWHAAZE00000003	exon	97673618	97673678	+
GWHAAZE00000003	exon	97675889	97675975	+
GWHAAZE00000003	exon	97676584	97676682	+
GWHAAZE00000003	exon	97676753	97676855	+
GWHAAZE00000003	exon	97677267	97677361	+
GWHAAZE00000003	exon	97677953	97678129	+
GWHAAZE00000003	CDS	97672985	97673016	+
GWHAAZE00000003	CDS	97673351	97673425	+
GWHAAZE00000003	CDS	97673618	97673678	+
GWHAAZE00000003	CDS	97675889	97675975	+
GWHAAZE00000003	CDS	97676584	97676682	+
GWHAAZE00000003	CDS	97676753	97676855	+
GWHAAZE00000003	CDS	97677267	97677361	+
GWHAAZE00000003	CDS	97677953	97678129	+

Transcript Sequence
>GWHTAAZE013168 ATTCGAACAGAAACAGCAGCAATGGCAGCTCCAATGGTGCAGGAGTCTCGTCCCATAGCTTTGGATTCTACATCTGAACCACCTCCTCTGTTTGATGGAACCACTAGGTTGTATGTCGCCTACATATGTCCGTTTGCACAGCGGGTGTGGATTGCCAGGAATTATAAGGGATTGCAAGATAAGATCAAATTGGTGGCTCTTGAGCTTCATGATAGGCCGGTTTGGTACAAGGAGAAACTTTACCCAGAAAATAAGGTACCAGCACTGGAACATGACAACAAAGTCATTGGAGAGAGTATGGAATTGGTTAGATATGTAGATAATCACTTTGAGGGACCTGCACTTCTACCCAATGATCAGGTGAAGAGAGAGTTTGCCGAAGAGTTAATATCCTACACAGATACATGTCTCAGAATAGTATATACTTCATTTAAAGGAGACCCTGTGAAGGAAGCTGGTGTTGCTTTTAATCACTTGGAAGCAGCTCTTCAGAAATTTGATGACGGGCCTTTCTTCCTCGGCCAGTTCAGTATGGCAAGTCACTTTTCATCTGTTGACATTGTCTATGTTCCCTTCTTCGAGAGGTTTCAGATCTTCTTAAAACCGGTGTTTAACTATGATTTCACATCAGGCAGACCTAAACTTGCAGCATATATGGAGGTATGTGATAGTAAATCATTTTCTTTCCATCAAGTAGAAAGCTGTATTAATAGAAAACCTTTGCTGTAG

Network for GWHGAAZE013154

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13417.7	GST_N_3	37	113	4.00E-18

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00799	GST, gst	Metabolic pathways	map01100
		Glutathione metabolism	map00480
		Metabolism of xenobiotics by cytochrome P450	map00980
		Drug metabolism - cytochrome P450	map00982
		Drug metabolism - other enzymes	map00983
		Longevity regulating pathway - worm	map04212

Gene Ontology

GO term	Ontology	Name
GO:0005737	cellular_component	cytoplasm
GO:0004364	molecular_function	glutathione transferase activity
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	34.842
	SRR3591706	second leaf	19.451
	SRR3591707	mature leaf	26.633
	SRR3591708	Shoot apex	15.165
	SRR3591709	Stem	64.047
	SRR3591710	White floral bud	20.003
	SRR3591711	White flower	19.683
	SRR3591712	Green floral bud	19.805
	SRR3591713	Yellow flower	24.446
SRP173429	SRR8316895	Juvenile bud stage	1.718
	SRR8316896	Juvenile bud stage	1.853
	SRR8316897	Juvenile bud stage	1.971
	SRR8316894	Third green stage	1.381
	SRR8316900	Third green stage	5.296
	SRR8316901	Third green stage	5.342
	SRR8316898	Complete white stage	0.292
	SRR8316899	Complete white stage	0.692
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.711
	SRR8316904	Silver flowering stage	0.445
	SRR8316905	Silver flowering stage	0.409
	SRR8316906	Gold flowering stage	1.563
	SRR8316907	Gold flowering stage	1.778
	SRR8316908	Gold flowering stage	1.616
SRP132670	SRR6706286	Control	3.715
	SRR6706287	Light intensity 50%	3.194
	SRR6706288	Light intensity 20%	2.274
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.938
	CNS0095593	Slightly white alabastrum(diploid) 2	1.383
	CNS0095594	Slightly white alabastrum(diploid) 3	3.028
	CNS0095595	Whole white alabastrum(diploid) 2	1.109
	CNS0095596	Whole white alabastrum(diploid) 3	2.346
	CNS0095597	Whole white alabastrum(diploid) 4	1.290
	CNS0095598	Silvery flower (diploied) 1	0.156
	CNS0095599	Silvery flower (diploied) 2	0.166
	CNS0095600	Silvery flower (diploied) 3	0.444
	CNS0095601	Golden flower (diploid) 1	0.592
	CNS0095602	Golden flower (diploid) 2	0.342
	CNS0095603	Golden flower (diploid) 3	0.500
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.957
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.325
	CNS0095606	Slightly white alabastrum(tetraploid) 3	8.119
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.935
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.475
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.002
	CNS0095610	Silvery flower (tetraploid) 1	0.328
	CNS0095611	Silvery flower (tetraploid) 2	0.354
	CNS0095612	Silvery flower (tetraploid) 3	0.286
	CNS0095613	Golden flower (tetraploid) 1	1.115
	CNS0095614	Golden flower (tetraploid) 2	1.396
	CNS0095615	Golden flower (tetraploid) 3	0.087
CRA001975	CRR073297	Stem 1	1.244
	CRR073298	Stem 2	0.831
	CRR073299	Stem 3	2.334
	CRR073300	Leaf 1	2.015
	CRR073301	Leaf 2	1.077
	CRR073302	Leaf 3	1.910
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.330
	CRR073305	Juvenile bud 3	0.232
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.085
	CRR073309	Second white 1	0.271
	CRR073310	Second white 2	0.086
	CRR073311	Second white 3	0.073
	CRR073312	Silver flowering 1	0.345
	CRR073313	Silver flowering 2	0.115
	CRR073314	Silver flowering 3	0.097
	CRR073315	Gold flowering 1	1.125
	CRR073316	Gold flowering 2	0.425
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	6.230
	CRR073319	Tawny withering 2	6.627
	CRR073320	Tawny withering 3	1.301