Gene detail

Detail information of GWHGAAZE013161

Functional Annotation

Database	Orthologs	Annotation
Nr	KHG11887.1	60S ribosomal L4 [Gossypium arboreum]
Swissprot	tr\|Q9SF40\|RL4A_ARATH	60S ribosomal protein L4-1
trEMBL	tr\|F6HQV3\|F6HQV3_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB57001.1}
TAIR10	AT3G09630.1	Ribosomal protein L4/L1 family

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	97821694	97824106	-
GWHAAZE00000003	mRNA	97821694	97824106	-
GWHAAZE00000003	exon	97821694	97821807	-
GWHAAZE00000003	exon	97822701	97823212	-
GWHAAZE00000003	exon	97823512	97824106	-
GWHAAZE00000003	CDS	97823512	97824106	-
GWHAAZE00000003	CDS	97822701	97823212	-
GWHAAZE00000003	CDS	97821694	97821807	-

Transcript Sequence
>GWHTAAZE013175 ATGGCCGCCGCAGCTCGACCTCTCGTGTCGATCCATACACTGGAGTCCGACATGGCCACCGACGGTGGTTCCACCTCCCTCCCCCTCCCCGACGTTATGAAGGCCGCCATCAGACCGGATATTGTGAATTTCGTACATCACAATATTTCGAAGAATTCACGTCAGCCTTACGCCGTATCCAAAAAAGCCGGCCACCAGACCTCCGCTGAGTCCTGGGGTACCGGACGAGCTGTTTCGCGTATCCCCCGTGTTCCCGGCGGCGGTACTCACCGCGCTGGACAGGGAGCCTTCGGGAACATGTGCAGAGGCGGTCGGATGTTTGCTCCGACGAAGATCTGGCGCCGATGGCACAGGAAGATCCCGGTGAACCAGAAAAGGTACGCTGTGGCTTCGGCTATTGCTGCTTCGGCGGTTCCGTCGCTGGTGATGGCACGTGGTCACCGGATCGAGTCGGTGCCTGAGATTCCGTTGGTGATTAGCGATTCTGCTGAGGGAGTTGAAAAGACTTCGAATGCTATCAAAGTTTTGAAGCAAGTTGGAGCTTATCCTGACGCTGAGAAAGCCAAGGATAGCCTTGGTATTCGCCCTGGAAAAGGTAAAATGAGGAATCGCCGATACATTTCTCGCAAGGGACCTCTCATTGTTTATGGAACTGAGGGATCAAAGCTTGTTAAGGCTTTCAGGAATATCCCTGGTGTTGAGATCGCTAATGTTGAGAGGCTCAATCTGCTTAAGCTTGCACCTGGTGGTCACCTTGGAAGGTTCATCATTTGGACCAAATCGGCCTTTGAGAAGTTGGATTCTATCTATGGATCATTTGATAAGCCTTCGGAGAAGAAGAAGGGTCATGTGTTGCCTCGATCAAAGATGGTGAATGCTGATCTTGCAAGAATTATCAATTCTGATGAGGTCCAGTCTGTGGTTAGGCCTATTAAAAAGGATGTGAAGAGGGCTCCAATGAAGAAGAATCCACTGAAGAACCTGAATACAATGTTGAAGCTTAACCCGTATGCTAAGACTGCGCGGAGGATGGCACTCTTGGCTGAGGCCCAACGTGTGAAGTCCAAGAAGGAGAAGCTAGACCAGAAGAGAAAGCCCATCACCAAGGAGGAGGCTTCTAAGATTAAGGCTGCTGGGAAGGGATGGTATCGTACTATGATCTCTGATAGTGATTATACTGAGTTTGAGAACTTCACGAAGTGGCTCGGGGTCTCCCAGTGA

Network for GWHGAAZE013161

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00573.23	Ribosomal_L4	28	267	1.70E-40
PF14374.7	Ribos_L4_asso_C	281	353	3.80E-27

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02930	RP-L4e, RPL4	Ribosome	map03010

Gene Ontology

GO term	Ontology	Name
GO:0006412	biological_process	translation
GO:0005840	cellular_component	ribosome
GO:0003735	molecular_function	structural constituent of ribosome

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	652.635
	SRR3591706	second leaf	314.870
	SRR3591707	mature leaf	157.671
	SRR3591708	Shoot apex	818.453
	SRR3591709	Stem	283.653
	SRR3591710	White floral bud	345.502
	SRR3591711	White flower	450.451
	SRR3591712	Green floral bud	691.109
	SRR3591713	Yellow flower	330.505
SRP173429	SRR8316895	Juvenile bud stage	340.343
	SRR8316896	Juvenile bud stage	458.134
	SRR8316897	Juvenile bud stage	233.819
	SRR8316894	Third green stage	175.946
	SRR8316900	Third green stage	635.128
	SRR8316901	Third green stage	554.327
	SRR8316898	Complete white stage	110.310
	SRR8316899	Complete white stage	559.909
	SRR8316903	Complete white stage	153.884
	SRR8316902	Silver flowering stage	113.638
	SRR8316904	Silver flowering stage	120.971
	SRR8316905	Silver flowering stage	62.075
	SRR8316906	Gold flowering stage	220.862
	SRR8316907	Gold flowering stage	212.444
	SRR8316908	Gold flowering stage	299.996
SRP132670	SRR6706286	Control	396.388
	SRR6706287	Light intensity 50%	424.079
	SRR6706288	Light intensity 20%	480.238
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	338.342
	CNS0095593	Slightly white alabastrum(diploid) 2	392.137
	CNS0095594	Slightly white alabastrum(diploid) 3	309.013
	CNS0095595	Whole white alabastrum(diploid) 2	295.249
	CNS0095596	Whole white alabastrum(diploid) 3	363.477
	CNS0095597	Whole white alabastrum(diploid) 4	241.788
	CNS0095598	Silvery flower (diploied) 1	212.029
	CNS0095599	Silvery flower (diploied) 2	200.707
	CNS0095600	Silvery flower (diploied) 3	213.132
	CNS0095601	Golden flower (diploid) 1	161.200
	CNS0095602	Golden flower (diploid) 2	201.650
	CNS0095603	Golden flower (diploid) 3	190.998
	CNS0095604	Slightly white alabastrum(tetraploid) 1	402.278
	CNS0095605	Slightly white alabastrum(tetraploid) 2	347.988
	CNS0095606	Slightly white alabastrum(tetraploid) 3	681.754
	CNS0095607	Whole white alabastrum(tetraploid) 1	167.077
	CNS0095608	Whole white alabastrum(tetraploid) 2	162.245
	CNS0095609	Whole white alabastrum(tetraploid) 3	551.564
	CNS0095610	Silvery flower (tetraploid) 1	232.169
	CNS0095611	Silvery flower (tetraploid) 2	211.664
	CNS0095612	Silvery flower (tetraploid) 3	149.294
	CNS0095613	Golden flower (tetraploid) 1	100.136
	CNS0095614	Golden flower (tetraploid) 2	192.127
	CNS0095615	Golden flower (tetraploid) 3	134.901
CRA001975	CRR073297	Stem 1	639.692
	CRR073298	Stem 2	621.667
	CRR073299	Stem 3	810.706
	CRR073300	Leaf 1	674.813
	CRR073301	Leaf 2	675.857
	CRR073302	Leaf 3	951.725
	CRR073303	Juvenile bud 1	883.214
	CRR073304	Juvenile bud 2	642.338
	CRR073305	Juvenile bud 3	759.678
	CRR073306	Third green 1	129.779
	CRR073307	Third green 2	118.749
	CRR073308	Third green 3	140.841
	CRR073309	Second white 1	219.338
	CRR073310	Second white 2	154.947
	CRR073311	Second white 3	137.805
	CRR073312	Silver flowering 1	214.274
	CRR073313	Silver flowering 2	342.911
	CRR073314	Silver flowering 3	239.077
	CRR073315	Gold flowering 1	203.227
	CRR073316	Gold flowering 2	283.318
	CRR073317	Gold flowering 3	290.942
	CRR073318	Tawny withering 1	509.625
	CRR073319	Tawny withering 2	373.739
	CRR073320	Tawny withering 3	609.435