Gene detail

Detail information of GWHGAAZE013176

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007027286.1	0	Peroxidase superfamily protein [Theobroma cacao]
Swissprot	tr\|Q42580\|PER21_ARATH	2E-170	Peroxidase 21 (Precursor)
trEMBL	tr\|A0A061ET17\|A0A061ET17_THECC	0	Peroxidase superfamily protein {ECO:0000313\|EMBL:EOY07788.1}
TAIR10	AT2G37130.1	6E-136	Peroxidase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	98035132	98041896	-
GWHAAZE00000003	mRNA	98035132	98041896	-
GWHAAZE00000003	exon	98041884	98041896	-
GWHAAZE00000003	exon	98036798	98036946	-
GWHAAZE00000003	exon	98036404	98036592	-
GWHAAZE00000003	exon	98036026	98036191	-
GWHAAZE00000003	exon	98035132	98035538	-
GWHAAZE00000003	CDS	98041884	98041896	-
GWHAAZE00000003	CDS	98036798	98036946	-
GWHAAZE00000003	CDS	98036404	98036592	-
GWHAAZE00000003	CDS	98036026	98036191	-
GWHAAZE00000003	CDS	98035132	98035538	-

Transcript Sequence
>GWHTAAZE013190 ATGAACAAGATAGGCAAAAGTGAGCTGCAGCTAAATTATTACTCAGAGAATTGCCCAAAAGCTGAAGAAATCATCCAAGAAGAAGTAACCAAGCTTTACTATAAGCATGGAAACACAGCTGTTTCATGGCTTAGAAATCTTTTTCATGATTGCATTGTTAAGTCATGTGATGCATCTCTATTGTTGGAGAGTGCAAATGGCATACAGTCAGAAAAGGCATCAACGAGGAGCTTTGGAATGAGAAATTTTAAGTACATAGACACCATCAAAGAGGCCCTTGAGAGTGCATGCCCAATGACAGTTTCATGTGCTGATGTTGTTGCTCTTTCTGCAAGAGATGGTGTTGTCTTGTTGGGAGGGCCTCGTGTTGAAATGAAAACTGGGCGAAAGGACAGCAGAGAAAGTCATGTGACAGAGCTCGAGAGGTTCATCCCTAACCACAACGATTCGATCACATCAATTTTGTCCGCCTTCGAATCCGTTGGTATTGATGCTGAAGGAACCGTGGCTATTTTAGGCGCTCATTCAGTGGGTCGTGTTCACTGTGTTAATATTGTGAACAGGCTTTACCCGGCCGTAGATCCGACCTTGGGCCCAAATTTTGCCGAATACCTCAAAGGGCGGTGCCCGTCCCCAGACCCCGACCCGACAGCAGTGGCATACTCGAGGAGTGACCGTGGAACACCAATGGTGCTCGACAATATGTACTACAAAAACATTTTGAACCACAAAGGACTATTGGTGATTGATCAACAACTTGCTTATCATCCTAACACATCTCCTTTTATTCAGAAAATGGCGGCTAGCAATAGCTATTTCCATCACCAATTCTCCAAGGCATTACTCATTTTGTCAGAGAATAATCCATTAACTGGAGATCAAGGAGAGATAAGAAGGGATTGCCGCTACATAAATAGCAATTAG

Network for GWHGAAZE013176

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00141.24	peroxidase	26	269	6.70E-58

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00430	E1.11.1.7	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Phenylpropanoid biosynthesis	map00940

Gene Ontology

GO term	Ontology	Name
GO:0006979	biological_process	response to oxidative stress
GO:0055114	biological_process	oxidation-reduction process
GO:0042744	biological_process	hydrogen peroxide catabolic process
GO:0004601	molecular_function	peroxidase activity
GO:0020037	molecular_function	heme binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	5.843
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	1.228
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	154.951
	SRR3591710	White floral bud	11.407
	SRR3591711	White flower	0.896
	SRR3591712	Green floral bud	0.038
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.091
	SRR8316896	Juvenile bud stage	0.072
	SRR8316897	Juvenile bud stage	0.082
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.566
	SRR8316901	Third green stage	0.156
	SRR8316898	Complete white stage	3.114
	SRR8316899	Complete white stage	6.443
	SRR8316903	Complete white stage	3.491
	SRR8316902	Silver flowering stage	1.791
	SRR8316904	Silver flowering stage	3.399
	SRR8316905	Silver flowering stage	1.262
	SRR8316906	Gold flowering stage	0.576
	SRR8316907	Gold flowering stage	4.346
	SRR8316908	Gold flowering stage	0.637
SRP132670	SRR6706286	Control	1.065
	SRR6706287	Light intensity 50%	1.212
	SRR6706288	Light intensity 20%	1.213
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.458
	CNS0095593	Slightly white alabastrum(diploid) 2	0.230
	CNS0095594	Slightly white alabastrum(diploid) 3	0.214
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.529
	CNS0095598	Silvery flower (diploied) 1	1.403
	CNS0095599	Silvery flower (diploied) 2	0.834
	CNS0095600	Silvery flower (diploied) 3	2.825
	CNS0095601	Golden flower (diploid) 1	0.423
	CNS0095602	Golden flower (diploid) 2	0.231
	CNS0095603	Golden flower (diploid) 3	0.850
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.132
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.203
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.112
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.280
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.244
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.138
	CNS0095610	Silvery flower (tetraploid) 1	1.689
	CNS0095611	Silvery flower (tetraploid) 2	5.153
	CNS0095612	Silvery flower (tetraploid) 3	1.797
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.075
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.100
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.567
	CRR073301	Leaf 2	0.577
	CRR073302	Leaf 3	1.687
	CRR073303	Juvenile bud 1	3.863
	CRR073304	Juvenile bud 2	2.056
	CRR073305	Juvenile bud 3	9.315
	CRR073306	Third green 1	3.535
	CRR073307	Third green 2	5.698
	CRR073308	Third green 3	8.174
	CRR073309	Second white 1	0.729
	CRR073310	Second white 2	0.004
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.343
	CRR073316	Gold flowering 2	0.140
	CRR073317	Gold flowering 3	0.751
	CRR073318	Tawny withering 1	105.893
	CRR073319	Tawny withering 2	97.035
	CRR073320	Tawny withering 3	130.707