Gene detail

Detail information of GWHGAAZE013177

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002280272.1	3.8544E-154	PREDICTED: syntaxin-71 [Vitis vinifera]
Swissprot	tr\|Q9SF29\|SYP71_ARATH	4E-134	Syntaxin-71
trEMBL	tr\|D7TQJ1\|D7TQJ1_VITVI	1E-154	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI32711.3}
TAIR10	AT3G09740.1	1E-106	syntaxin of plants 71

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	98057143	98061378	+
GWHAAZE00000003	mRNA	98057143	98061378	+
GWHAAZE00000003	exon	98057143	98057298	+
GWHAAZE00000003	exon	98057386	98057511	+
GWHAAZE00000003	exon	98060113	98060272	+
GWHAAZE00000003	exon	98060390	98060475	+
GWHAAZE00000003	exon	98060955	98061023	+
GWHAAZE00000003	exon	98061169	98061213	+
GWHAAZE00000003	exon	98061301	98061378	+
GWHAAZE00000003	CDS	98057143	98057298	+
GWHAAZE00000003	CDS	98057386	98057511	+
GWHAAZE00000003	CDS	98060113	98060272	+
GWHAAZE00000003	CDS	98060390	98060475	+
GWHAAZE00000003	CDS	98060955	98061023	+
GWHAAZE00000003	CDS	98061169	98061213	+
GWHAAZE00000003	CDS	98061301	98061378	+

Transcript Sequence
>GWHTAAZE013191 ATGAGTGTAATCGACATTCTAACGAGAGTCGATGCGATCTGCAAGAAGTACGACAAGTACGACTTCGAAAAGCAGAAGGATCTCAACATCTCCGGTGACGATGCATTTGCTCGTTTGTACGCCGCCGTTGAATCCGATATAGAATCAGCTCTTCAGAAAGCGGAGGCAGCTTCGACTGAGAAAAATAGGGCTTCTGCTGTAGCGATTAACGCTGAGATTCGTCGTACTAAGGCTCGGTTGCTAGAGGAAGTGCCTAAATTGCAGAGATTGGCTGTAAAGAAGGTTAAAGGGCTTTCATCCGAAGAATATGCTGCCCGTAATGATTTGGCCCTTGCACTGCCAGATAGAATTCAAGCCATACCAGATGGTGCTGCTGCTGCACCCAAACAAACTGGAGGCTGGGCATCTTCAGCTTCTCGTACAGAAATCAAATTTGATTCAGATGGCCGTTTTGACAGTGAATACTTCCAGCAAACTGAAGAGTCCAGCCAATTCAGGCAAGAGTATGAAATGCGGAAAGTGAAGCAGGATCAAGGTTTGGAAGTGATATCAGAAGGTTTGGATACATTGAAAAACATGGCCCAGGATATGAACGAGGAAATAGACAAGCAAGTTCCTTTGATGGATGAGATTGACACTAAGGTGGACAAGGCAACATCTGACCTTAAGAATACTAATGTTAGACTTAAGGACACTGTGAACCAGGTGATTAATCAGTAA

Network for GWHGAAZE013177

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K08506	SYP7	SNARE interactions in vesicular transport	map04130

Gene Ontology

GO term	Ontology	Name
GO:0006886	biological_process	intracellular protein transport
GO:0016020	cellular_component	membrane
GO:0005484	molecular_function	SNAP receptor activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	140.453
	SRR3591706	second leaf	70.907
	SRR3591707	mature leaf	58.975
	SRR3591708	Shoot apex	94.704
	SRR3591709	Stem	96.978
	SRR3591710	White floral bud	122.535
	SRR3591711	White flower	131.104
	SRR3591712	Green floral bud	99.010
	SRR3591713	Yellow flower	133.008
SRP173429	SRR8316895	Juvenile bud stage	59.544
	SRR8316896	Juvenile bud stage	83.550
	SRR8316897	Juvenile bud stage	47.424
	SRR8316894	Third green stage	38.619
	SRR8316900	Third green stage	111.707
	SRR8316901	Third green stage	110.870
	SRR8316898	Complete white stage	76.570
	SRR8316899	Complete white stage	155.848
	SRR8316903	Complete white stage	114.492
	SRR8316902	Silver flowering stage	61.968
	SRR8316904	Silver flowering stage	90.652
	SRR8316905	Silver flowering stage	48.305
	SRR8316906	Gold flowering stage	159.560
	SRR8316907	Gold flowering stage	150.182
	SRR8316908	Gold flowering stage	154.342
SRP132670	SRR6706286	Control	169.613
	SRR6706287	Light intensity 50%	179.116
	SRR6706288	Light intensity 20%	190.331
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	64.906
	CNS0095593	Slightly white alabastrum(diploid) 2	68.604
	CNS0095594	Slightly white alabastrum(diploid) 3	67.115
	CNS0095595	Whole white alabastrum(diploid) 2	56.935
	CNS0095596	Whole white alabastrum(diploid) 3	58.048
	CNS0095597	Whole white alabastrum(diploid) 4	57.980
	CNS0095598	Silvery flower (diploied) 1	68.813
	CNS0095599	Silvery flower (diploied) 2	67.558
	CNS0095600	Silvery flower (diploied) 3	123.217
	CNS0095601	Golden flower (diploid) 1	58.933
	CNS0095602	Golden flower (diploid) 2	100.413
	CNS0095603	Golden flower (diploid) 3	96.037
	CNS0095604	Slightly white alabastrum(tetraploid) 1	94.037
	CNS0095605	Slightly white alabastrum(tetraploid) 2	69.443
	CNS0095606	Slightly white alabastrum(tetraploid) 3	150.004
	CNS0095607	Whole white alabastrum(tetraploid) 1	53.137
	CNS0095608	Whole white alabastrum(tetraploid) 2	46.343
	CNS0095609	Whole white alabastrum(tetraploid) 3	113.530
	CNS0095610	Silvery flower (tetraploid) 1	136.548
	CNS0095611	Silvery flower (tetraploid) 2	128.342
	CNS0095612	Silvery flower (tetraploid) 3	134.463
	CNS0095613	Golden flower (tetraploid) 1	104.965
	CNS0095614	Golden flower (tetraploid) 2	112.843
	CNS0095615	Golden flower (tetraploid) 3	117.080
CRA001975	CRR073297	Stem 1	123.283
	CRR073298	Stem 2	109.312
	CRR073299	Stem 3	125.044
	CRR073300	Leaf 1	138.682
	CRR073301	Leaf 2	134.327
	CRR073302	Leaf 3	183.811
	CRR073303	Juvenile bud 1	158.876
	CRR073304	Juvenile bud 2	171.790
	CRR073305	Juvenile bud 3	107.840
	CRR073306	Third green 1	198.621
	CRR073307	Third green 2	197.394
	CRR073308	Third green 3	175.721
	CRR073309	Second white 1	108.804
	CRR073310	Second white 2	136.493
	CRR073311	Second white 3	113.877
	CRR073312	Silver flowering 1	83.485
	CRR073313	Silver flowering 2	71.534
	CRR073314	Silver flowering 3	83.473
	CRR073315	Gold flowering 1	83.079
	CRR073316	Gold flowering 2	96.318
	CRR073317	Gold flowering 3	54.784
	CRR073318	Tawny withering 1	136.890
	CRR073319	Tawny withering 2	109.849
	CRR073320	Tawny withering 3	144.286