Gene detail

Detail information of GWHGAAZE013189

Functional Annotation

Database	Orthologs	Annotation
Nr	AGE10591.1	phenylalanine amononia-lyase [Lonicera japonica]
Swissprot	tr\|P45729\|PAL3_PETCR	Phenylalanine ammonia-lyase 3
trEMBL	tr\|L7Z7Y1\|L7Z7Y1_LONJA	Phenylalanine ammonia-lyase {ECO:0000256\|RuleBase:RU003955}
TAIR10	AT2G37040.1	PHE ammonia lyase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	98300650	98303471	+
GWHAAZE00000003	mRNA	98300650	98303471	+
GWHAAZE00000003	exon	98300650	98301084	+
GWHAAZE00000003	exon	98301725	98303471	+
GWHAAZE00000003	five_prime_UTR	98300650	98300725	+
GWHAAZE00000003	CDS	98300726	98301084	+
GWHAAZE00000003	CDS	98301725	98303471	+

Transcript Sequence
>GWHTAAZE013203 AGTAGTTCTAGTGGGCGACGCTCACTAGTGAGTTAAATTTTTTGTGTACAATTTTTACAAACTTAAGAAAAAAAAAATGACTACTGAATTGAATTTATGTGTGGACCCATTGAACTGGGGACTGGCAGCGGAAGCGATGAAGGGAAGTCACCTGGAGGAAGTGAAGCGGATGGTAGCGGAATTTAGAAATCCAGTGGTGGCTCTAGGCGGAGAAGGGCTGACGATATCACAGGTGGCAGCGGTTGCCACCAGTGACGGCGGCAGCGTGAAGGTGGAGCTGGCAGAGGAGGCTAGAGGGAGGGTGAAGGCAAGTAGTGATTGGGTGATGGAGAGTATGAATAAAGGGACAGATAGTTATGGGGTAACTACTGGCTTTGGTGCTACTTCTCATAGAAGGACTAAACAGGGTGGTGCCTTACAAAAGGAACTTATTAGGTTCTTGAACGCTGGAATCTTTGGCAACGGCACAGAATCTGCCCACACGCTGCCACACACTGCCACCAGAGCCGCCATGCTAGTAAGAATCAACACCCTCCTCCAGGGCTACTCGGGCATCCGCTTCGAAATCCTCGAAGCCATAACCAAATTCCTCAACCACAACATCACCCCAACCCTCCCCCTCAGGGGAACCATCACCGCCTCTGGTGACTTAGTCCCCTTATCCTACATTGCTGGACTCCTAACTGGCCGCCCCAACTCCAAGGCAGTTGGCCCCTCCGGCCAGACCCTCACCCCAGGAGAGGCCTTTGCACTCGCTGGAGCCGGTGACTTTTTTGAGCTACAACCCAAAGAAGGCTTAGCACTAGTCAATGGGACCGCTGTGGGGTCTGGTCTAGCCTCAATGGTCCTATTCGAAGCGAATACTCTAGCACTCTTATCTGAAGTACTGTCAGCAATATTTGCTGAAGTAATGCAGGGTAAGCCCGAATTTACGGACCATTTGACCCATAAATTAAAGCACCACCCTGGTCAAATTGAGGCCGCGGCCATAATGGAACATATTTTAGATGGTAGCTCTTACGTCAAAGCTGCCGAAAAATTACACGAAATGGACCCGTTGCAAAAACCTAAACAAGACAGGTATGCCCTCCGAACCTCTCCTCAATGGCTCGGCCCGCAAATCGAGGTCATCCGGTCTGCTACCAAAATGATCGAACGGGAAATAAATTCGGTCAACGACAACCCTTTGATCGACGTGTCAAGGAACAAAGCCTTACATGGTGGCAATTTCCAAGGGACCCCAATTGGTGTGTCAATGGACAACACTAGGCTAGCTATTGGTTCGATTGGAAAATTAATGTTTGCACAATTTTCGGAGCTCGTCAACGATTTTTACAATAATGGGCTGCCCTCAAATCTCTCAGGTGGGCGAAACCCGAGCTTGGATTATGGGTTCAAAGGTGCTGAAATTGCAATGGCCTCTTATTGCTCTGAACTGCAATTTTTGGCTAATCCTGTTACTAACCACGTGCAAAGTGCTGAGCAACATAACCAAGATGTGAACTCATTGGGCCTAATTTCTTCAAGAAAAACAGCCGAGTCAGTTGAGATACTAAAATTAATGTCATCAACCTTTTTAGTAGCTTTATGCCAAGCTATAGATTTGAGGCATTTGGAGGAGAATTTAAAGCATACTGTGAAGAGCACTGTTAGCCAAGTGGCTAAAAGGGTCCTAACCATGGGGACTAATGGTGAACTCCACCCATCAAGATTTTGTGAAAAGGACTTGCTCCGGGTGGTGGACCGCGAGCAACTTTTTTCGTACATTGATGATCCTATCAGTGCCACGTATCCATTGATGCAAAAACTCAGGCAGGTGTTGGTAGAACACGCGCTGAAAAACGGTGAGAACGAGAAGAACCCAAATGCGTCGATCTTCCAGAAGATAGCGTTGTTTGAGGAGGAATTGAAGACCATTTTGCCCAAGGAAGTGGAAATTGCTAGGGTGGCAGTGGAGAGTGAGAATCCGGTTATTGGGAACCGGATTAAGGAGTGCCGGTCTTACCCGTTGTATAGGTTTGTGAGGGAGGAGTTGGGGACGGCGTTGCTGACTGGAGAAAAGGTTCGGTCACCGGGGGAGGAGTTTGATTTGGTGTTTAGTGCCATGTGTAAAGGGCTGGTTATTGATCCATTGTTGGAGTGTTTGGAGGCTTGGAATGGTGCTCCTCTTCCAATATGTTAG

Network for GWHGAAZE013189

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0016

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00221.20	Lyase_aromatic	48	520	1.10E-153

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K10775	PAL	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Phenylalanine metabolism	map00360
		Phenylpropanoid biosynthesis	map00940

Gene Ontology

GO term	Ontology	Name
GO:0006559	biological_process	L-phenylalanine catabolic process
GO:0005737	cellular_component	cytoplasm
GO:0016841	molecular_function	ammonia-lyase activity
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	133.601
	SRR3591706	second leaf	26.583
	SRR3591707	mature leaf	27.816
	SRR3591708	Shoot apex	28.614
	SRR3591709	Stem	445.049
	SRR3591710	White floral bud	41.276
	SRR3591711	White flower	40.198
	SRR3591712	Green floral bud	37.994
	SRR3591713	Yellow flower	12.447
SRP173429	SRR8316895	Juvenile bud stage	47.099
	SRR8316896	Juvenile bud stage	25.125
	SRR8316897	Juvenile bud stage	39.854
	SRR8316894	Third green stage	10.357
	SRR8316900	Third green stage	33.426
	SRR8316901	Third green stage	38.382
	SRR8316898	Complete white stage	3.576
	SRR8316899	Complete white stage	46.771
	SRR8316903	Complete white stage	8.980
	SRR8316902	Silver flowering stage	9.757
	SRR8316904	Silver flowering stage	13.361
	SRR8316905	Silver flowering stage	5.193
	SRR8316906	Gold flowering stage	28.009
	SRR8316907	Gold flowering stage	36.790
	SRR8316908	Gold flowering stage	54.263
SRP132670	SRR6706286	Control	46.255
	SRR6706287	Light intensity 50%	52.416
	SRR6706288	Light intensity 20%	52.981
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	42.369
	CNS0095593	Slightly white alabastrum(diploid) 2	37.932
	CNS0095594	Slightly white alabastrum(diploid) 3	53.851
	CNS0095595	Whole white alabastrum(diploid) 2	37.651
	CNS0095596	Whole white alabastrum(diploid) 3	9.470
	CNS0095597	Whole white alabastrum(diploid) 4	35.727
	CNS0095598	Silvery flower (diploied) 1	74.378
	CNS0095599	Silvery flower (diploied) 2	79.548
	CNS0095600	Silvery flower (diploied) 3	30.145
	CNS0095601	Golden flower (diploid) 1	65.319
	CNS0095602	Golden flower (diploid) 2	69.195
	CNS0095603	Golden flower (diploid) 3	66.049
	CNS0095604	Slightly white alabastrum(tetraploid) 1	20.183
	CNS0095605	Slightly white alabastrum(tetraploid) 2	12.997
	CNS0095606	Slightly white alabastrum(tetraploid) 3	62.762
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.928
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.775
	CNS0095609	Whole white alabastrum(tetraploid) 3	68.468
	CNS0095610	Silvery flower (tetraploid) 1	13.696
	CNS0095611	Silvery flower (tetraploid) 2	5.412
	CNS0095612	Silvery flower (tetraploid) 3	19.747
	CNS0095613	Golden flower (tetraploid) 1	21.696
	CNS0095614	Golden flower (tetraploid) 2	24.402
	CNS0095615	Golden flower (tetraploid) 3	2.983
CRA001975	CRR073297	Stem 1	36.565
	CRR073298	Stem 2	28.320
	CRR073299	Stem 3	28.776
	CRR073300	Leaf 1	34.665
	CRR073301	Leaf 2	35.396
	CRR073302	Leaf 3	34.726
	CRR073303	Juvenile bud 1	27.170
	CRR073304	Juvenile bud 2	24.847
	CRR073305	Juvenile bud 3	36.940
	CRR073306	Third green 1	390.093
	CRR073307	Third green 2	120.217
	CRR073308	Third green 3	226.562
	CRR073309	Second white 1	176.931
	CRR073310	Second white 2	104.838
	CRR073311	Second white 3	172.763
	CRR073312	Silver flowering 1	209.383
	CRR073313	Silver flowering 2	212.536
	CRR073314	Silver flowering 3	224.038
	CRR073315	Gold flowering 1	9.545
	CRR073316	Gold flowering 2	22.116
	CRR073317	Gold flowering 3	34.317
	CRR073318	Tawny withering 1	59.694
	CRR073319	Tawny withering 2	147.790
	CRR073320	Tawny withering 3	92.206