Detail information of GWHGAAZE013199


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002282259.14.4146E-163PREDICTED: transcription initiation factor TFIID subunit 8 [Vitis vinifera]
Swissprottr|Q9SYZ9|TAF8_ARATH2E-95Transcription initiation factor TFIID subunit 8
trEMBLtr|F6HR51|F6HR51_VITVI2E-163Putative uncharacterized protein {ECO:0000313|EMBL:CCB57100.1}
TAIR10AT4G34340.13E-68TBP-associated factor 8

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene9846734198468336-
GWHAAZE00000003mRNA9846734198468336-
GWHAAZE00000003exon9846734198468336-
GWHAAZE00000003CDS9846734198468336-
Transcript Sequence

Network for GWHGAAZE013199

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF07524.14Bromo_TP1602.40E-18
PF10406.10TAF8_C1241723.30E-20
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K14649TAF8 Basal transcription factors map03022

Gene Ontology

GO term OntologyName
GO:0046982molecular_functionprotein heterodimerization activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf8.125
SRR3591706second leaf5.762
SRR3591707mature leaf7.943
SRR3591708Shoot apex14.220
SRR3591709Stem8.580
SRR3591710White floral bud12.723
SRR3591711White flower15.215
SRR3591712Green floral bud15.055
SRR3591713Yellow flower11.043
SRP173429 SRR8316895Juvenile bud stage 5.551
SRR8316896Juvenile bud stage 6.905
SRR8316897Juvenile bud stage 3.845
SRR8316894Third green stage 3.412
SRR8316900Third green stage 8.161
SRR8316901Third green stage 8.493
SRR8316898Complete white stage 4.875
SRR8316899Complete white stage 15.716
SRR8316903Complete white stage 8.429
SRR8316902Silver flowering stage3.925
SRR8316904Silver flowering stage4.313
SRR8316905Silver flowering stage2.280
SRR8316906Gold flowering stage 7.932
SRR8316907Gold flowering stage 8.515
SRR8316908Gold flowering stage 8.959
SRP132670SRR6706286Control6.273
SRR6706287Light intensity 50%5.960
SRR6706288Light intensity 20%6.055
CNP0000432CNS0095592Slightly white alabastrum(diploid) 19.675
CNS0095593Slightly white alabastrum(diploid) 28.989
CNS0095594Slightly white alabastrum(diploid) 311.540
CNS0095595Whole white alabastrum(diploid) 210.668
CNS0095596Whole white alabastrum(diploid) 35.946
CNS0095597Whole white alabastrum(diploid) 410.162
CNS0095598Silvery flower (diploied) 112.618
CNS0095599Silvery flower (diploied) 210.621
CNS0095600Silvery flower (diploied) 38.979
CNS0095601Golden flower (diploid) 110.839
CNS0095602Golden flower (diploid) 210.817
CNS0095603Golden flower (diploid) 313.098
CNS0095604Slightly white alabastrum(tetraploid) 110.250
CNS0095605Slightly white alabastrum(tetraploid) 27.010
CNS0095606Slightly white alabastrum(tetraploid) 314.467
CNS0095607Whole white alabastrum(tetraploid) 16.955
CNS0095608Whole white alabastrum(tetraploid) 26.363
CNS0095609Whole white alabastrum(tetraploid) 38.267
CNS0095610Silvery flower (tetraploid) 18.256
CNS0095611Silvery flower (tetraploid) 29.254
CNS0095612Silvery flower (tetraploid) 38.535
CNS0095613Golden flower (tetraploid) 17.026
CNS0095614Golden flower (tetraploid) 29.894
CNS0095615Golden flower (tetraploid) 38.473
CRA001975CRR073297Stem 115.539
CRR073298Stem 212.363
CRR073299Stem 313.355
CRR073300Leaf 112.408
CRR073301Leaf 211.215
CRR073302Leaf 38.881
CRR073303Juvenile bud 19.855
CRR073304Juvenile bud 29.270
CRR073305Juvenile bud 312.733
CRR073306Third green 16.579
CRR073307Third green 23.947
CRR073308Third green 34.301
CRR073309Second white 15.679
CRR073310Second white 24.707
CRR073311Second white 33.309
CRR073312Silver flowering 16.871
CRR073313Silver flowering 25.429
CRR073314Silver flowering 38.876
CRR073315Gold flowering 17.549
CRR073316Gold flowering 210.404
CRR073317Gold flowering 312.733
CRR073318Tawny withering 19.986
CRR073319Tawny withering 211.451
CRR073320Tawny withering 311.031