Gene detail

Detail information of GWHGAAZE013201

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDP29162.1	0	hypothetical protein JCGZ_16551 [Jatropha curcas]
Swissprot	tr\|Q6B910\|SYH_GRATL	4E-34	Histidine--tRNA ligase, chloroplastic {ECO:0000255\|HAMAP-Rule:MF_00127}
trEMBL	tr\|A0A067JZ42\|A0A067JZ42_JATCU	0	Uncharacterized protein {ECO:0000313\|EMBL:KDP29162.1}
TAIR10	AT3G46100.1	0	Histidyl-tRNA synthetase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	98574329	98591924	+
GWHAAZE00000003	mRNA	98574329	98591924	+
GWHAAZE00000003	exon	98574329	98574697	+
GWHAAZE00000003	exon	98575037	98575132	+
GWHAAZE00000003	exon	98578040	98578128	+
GWHAAZE00000003	exon	98578787	98578916	+
GWHAAZE00000003	exon	98579170	98579262	+
GWHAAZE00000003	exon	98580922	98581039	+
GWHAAZE00000003	exon	98588364	98588506	+
GWHAAZE00000003	exon	98588809	98588937	+
GWHAAZE00000003	exon	98590113	98590276	+
GWHAAZE00000003	exon	98591566	98591924	+
GWHAAZE00000003	CDS	98574329	98574697	+
GWHAAZE00000003	CDS	98575037	98575132	+
GWHAAZE00000003	CDS	98578040	98578128	+
GWHAAZE00000003	CDS	98578787	98578916	+
GWHAAZE00000003	CDS	98579170	98579262	+
GWHAAZE00000003	CDS	98580922	98581039	+
GWHAAZE00000003	CDS	98588364	98588506	+
GWHAAZE00000003	CDS	98588809	98588937	+
GWHAAZE00000003	CDS	98590113	98590276	+
GWHAAZE00000003	CDS	98591566	98591704	+
GWHAAZE00000003	three_prime_UTR	98591705	98591924	+

Transcript Sequence
>GWHTAAZE013215 ATGGCTGCAATTGCGAACTCTTCTCTCCTTATCCTACACCCTCGTCTCACACTATCCCTCTTTCTCAAATCCTCACTCTCCACCACCTTCTTCCGCCATTTCCCCCTCTCTCCTTGCATTCTCTCCGCCACCAGTAGAAGAAGAAGCCAATCATCTCTACCTTCCGTAGCACTAACAAAACAACACTCTCTCAACCCTAACCCTAACGAAAATTCCGCGTCCGGCGGCCGTTTAGGTTCCCTCTCCTCTCCTCCAGTACTTGCCTCCGATTTCGTTCAGAAAATCGACGTCAATCCTCCCAAAGGAACCAGGGACTTCCCTCCTGAGGATATGCGCCTTCGTTCTTGGCTTTTTCACAACTTCAGAGAGGTTTCTCAATTGTATGGGTTTGAAGAGATTGATTTTCCAGTACTAGAATCGGAGGCGCTTTTTATCCGGAAAGCCGGAGAGGAGATCAGAGACCAGCTTTACTGTTTTGAGGACCGGGGAAATCGGCGAGTTGCGTTGAGGCCTGAACTCACTCCTTCTTTGGCAAGGCTTGTGATACAGAAAGGAAAATCTTTATCTCTCCCAATAAAATGGTTTGCTATTGGACAGTGCTGGCGTTATGAGAGAATGACTAGGGGCCGCCGCCGTGAGCACTACCAGTGGAACATGGATATCATTGGTGTGCCTGAAGTAACTGCCGAAGCTGAACTTCTCTCTTCTATTGTCACATTTTTCAAGCGAATTGGAATCACAGCATCAGATGTTGGGTTTAAGATATCTAGCAGAAAGATCGAAAAGATACCGATAGATGAGATGAAGAAAGAGTTAAGGTCTGTTGAGTTATCGGAGGAGGTTATTGAGAACCTTTTGCAAGTTCTTTCTGTGAAGTCTTTGACAAAGTTGGAAGAGAAACTTGGAGGTGGTGGTGAAGCGGTTGGAGATCTGAAGCAACTATTCTCACTGGCTGAAAAGTATGGTATTTCAGAGTGGATTCAGTTTGATGCGTCTATTGTCCGTGGCCTAGCTTACTATACTGGAATTGTATTTGAGGGTTTTGATAGAGCCGGGAAGCTACGAGCCATTTGTGGTGGTGGACGGTATAATCAGTTGCTTTCTACTTTTGGAGGTGATGACATTCCTGCCTGTGGCTTTGGATTTGGTGATGCTGTAATAGTAGAATTGCTCAAGGACAAAGGCCTTCTACCAGAACTTAGTCCCCAAGTAGAGAACATTGTGTGCTCGCTTGATCGTGATCTTCAAGGTGCAGCTGCTGCAGTTGCTACAATACTGAGGGAAAAAGGCCAAAGTGTTGATTTAGTGATGGAAACCAAACCACTTAAATGGGTGTTCAAAAGGGCGGCACGGATAAACGCGAATAGGCTGATATTGGTGGGAAATTCAGAGTGGCAAAAAGGTATGGTGGTTGTAAAAATCCTTTCATCTGGCAAACAGTTTGAGATTAAAATTGATGAACTAGAGTGATGAGAAACTGATTCTAGGGGCAATTTGTACTTTCTGGCATTCATCTTTATTGTTTAAGCTAAATATTTTACTCGGTGATTTATCTCCTCCATTTTGTGTCTATATTAATTTTGTAGTGATCTAGTGTAAACAAAGTCAAACAGGCATTGTGAATAAAAGAAATTAGAGTTTTCCGTATGTTGTAAATTGTCCTTTCAACTAAGTTACTCTTATTGTTCAA

Network for GWHGAAZE013201

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13393.7	tRNA-synt_His	102	299	1.10E-22
PF03129.21	HGTP_anticodon	410	488	1.30E-08

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01892	HARS, hisS	Aminoacyl-tRNA biosynthesis	map00970

Gene Ontology

GO term	Ontology	Name
GO:0006427	biological_process	histidyl-tRNA aminoacylation
GO:0005737	cellular_component	cytoplasm
GO:0004821	molecular_function	histidine-tRNA ligase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	27.546
	SRR3591706	second leaf	41.632
	SRR3591707	mature leaf	26.812
	SRR3591708	Shoot apex	41.091
	SRR3591709	Stem	19.623
	SRR3591710	White floral bud	24.095
	SRR3591711	White flower	36.417
	SRR3591712	Green floral bud	29.104
	SRR3591713	Yellow flower	44.039
SRP173429	SRR8316895	Juvenile bud stage	28.502
	SRR8316896	Juvenile bud stage	37.538
	SRR8316897	Juvenile bud stage	17.821
	SRR8316894	Third green stage	14.008
	SRR8316900	Third green stage	40.943
	SRR8316901	Third green stage	38.042
	SRR8316898	Complete white stage	13.222
	SRR8316899	Complete white stage	37.317
	SRR8316903	Complete white stage	19.875
	SRR8316902	Silver flowering stage	17.727
	SRR8316904	Silver flowering stage	25.380
	SRR8316905	Silver flowering stage	11.915
	SRR8316906	Gold flowering stage	42.948
	SRR8316907	Gold flowering stage	43.583
	SRR8316908	Gold flowering stage	43.272
SRP132670	SRR6706286	Control	33.847
	SRR6706287	Light intensity 50%	35.910
	SRR6706288	Light intensity 20%	38.081
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	31.163
	CNS0095593	Slightly white alabastrum(diploid) 2	26.202
	CNS0095594	Slightly white alabastrum(diploid) 3	30.265
	CNS0095595	Whole white alabastrum(diploid) 2	33.801
	CNS0095596	Whole white alabastrum(diploid) 3	33.918
	CNS0095597	Whole white alabastrum(diploid) 4	32.717
	CNS0095598	Silvery flower (diploied) 1	24.032
	CNS0095599	Silvery flower (diploied) 2	32.072
	CNS0095600	Silvery flower (diploied) 3	38.824
	CNS0095601	Golden flower (diploid) 1	22.546
	CNS0095602	Golden flower (diploid) 2	33.413
	CNS0095603	Golden flower (diploid) 3	33.916
	CNS0095604	Slightly white alabastrum(tetraploid) 1	26.439
	CNS0095605	Slightly white alabastrum(tetraploid) 2	28.782
	CNS0095606	Slightly white alabastrum(tetraploid) 3	30.286
	CNS0095607	Whole white alabastrum(tetraploid) 1	24.509
	CNS0095608	Whole white alabastrum(tetraploid) 2	26.266
	CNS0095609	Whole white alabastrum(tetraploid) 3	35.913
	CNS0095610	Silvery flower (tetraploid) 1	33.197
	CNS0095611	Silvery flower (tetraploid) 2	31.506
	CNS0095612	Silvery flower (tetraploid) 3	33.675
	CNS0095613	Golden flower (tetraploid) 1	24.892
	CNS0095614	Golden flower (tetraploid) 2	31.604
	CNS0095615	Golden flower (tetraploid) 3	26.708
CRA001975	CRR073297	Stem 1	35.178
	CRR073298	Stem 2	32.720
	CRR073299	Stem 3	31.307
	CRR073300	Leaf 1	35.861
	CRR073301	Leaf 2	30.692
	CRR073302	Leaf 3	32.453
	CRR073303	Juvenile bud 1	31.427
	CRR073304	Juvenile bud 2	24.555
	CRR073305	Juvenile bud 3	25.490
	CRR073306	Third green 1	18.312
	CRR073307	Third green 2	11.563
	CRR073308	Third green 3	15.639
	CRR073309	Second white 1	21.599
	CRR073310	Second white 2	25.600
	CRR073311	Second white 3	23.499
	CRR073312	Silver flowering 1	22.236
	CRR073313	Silver flowering 2	22.362
	CRR073314	Silver flowering 3	22.925
	CRR073315	Gold flowering 1	34.835
	CRR073316	Gold flowering 2	46.130
	CRR073317	Gold flowering 3	23.629
	CRR073318	Tawny withering 1	15.992
	CRR073319	Tawny withering 2	13.616
	CRR073320	Tawny withering 3	18.069