Gene detail

Detail information of GWHGAAZE013210

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_003625682.1	S-adenosylmethionine synthetase [Medicago truncatula]
Swissprot	tr\|Q96553\|METK3_CATRO	S-adenosylmethionine synthase 3
trEMBL	tr\|A0A068UET8\|A0A068UET8_COFCA	S-adenosylmethionine synthase {ECO:0000256\|RuleBase:RU000541}
TAIR10	AT2G36880.2	methionine adenosyltransferase 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	98717441	98718613	+
GWHAAZE00000003	mRNA	98717441	98718613	+
GWHAAZE00000003	exon	98717441	98718613	+
GWHAAZE00000003	CDS	98717441	98718613	+

Transcript Sequence
>GWHTAAZE013224 ATGGAAACATTCCTTTTCACCTCAGAATCTGTCAATGAAGGCCACCCCGACAAGCTCTGCGACCAAGTCTCTGATGCAATCCTTGATGCTTGCCTAGAGCAAGACCCCGAGAGTAAAGTTGCCTGTGAAACCTGCACAAAAACCAACATGGTCATGGTTTTCGGAGAAATTACAACCAAAGCCACCGTTAACTACGAGAAGATAGTTCGGGATACATGCCGAGGCATCGGTTTCACCTCACCTGATGTGGGACTAGACGCTGATCACTGCAAGGTCCTTGTCAACATTGAGCAACAAAGCCCTGATATTGCCCAAGGGGTCCACGGTCACTTGACCAAAAAGCCCGAGGAGATTGGAGCCGGTGACCAAGGCCACATGTTCGGTTATGCTACTGATGAAACCCCCGAGCTTATGCCCTTAACCCACGTTTTAGCTACCAAGCTCGGTGCCAAGCTCACTGAGGTGAGGAAGAACAAGACGTGCGCATGGCTCAGGCCTGATGGCAAGACTCAGGTCACAGTCGAGTACAAGAACGACGGTGGAGCCATGGTCCCTATCAGGGTCCACACAGTCCTCATCTCAACCCAACACGACGAGACTGTCACTAACGAGAAGATAGCCGAGGATTTGAAGGAACATGTGATTAAGCCGGTTATCCCAGCTCAGTATCTCGATGACAAGACCATCTTCCACCTCAACCCGTCTGGTCGGTTTGTTATTGGTGGGCCCCATGGGGACGCTGGACTCACAGGCCGGAAGATTATTATTGACACCTATGGCGGATGGGGAGCTCATGGTGGTGGTGCTTTCTCCGGGAAGGACCCTACTAAGGTGGACCGGAGTGGGGCCTACATTGTAAGGCAAGCGGCCAAGAGTGTAGTTGCCTCAGGACTTGCACGACGCTGCATTGTGCAGGTTTCATATGCCATTGGTGTAGCGGAACCGCTATCCGTATTTGTGGATACTTACAAAACTGGGAAGATTCCGGATAAGGATATCCTTGTTTTGATTAAGGAGAATTTTGACTTTAGGCCCGGAATGATGTCTATTAATCTTGACTTGAAGAGGGGAGGTAACTTTAGGTACCAAAAGACTGCTGCTTATGGTCATTTTGGCCGTGATGACCCAGATTTTACTTGGGAGACTGTGAAGATCTTAAAACCAAAAGCTTAA

Network for GWHGAAZE013210

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0097

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00438.21	S-AdoMet_synt_N	4	101	2.60E-42
PF02772.17	S-AdoMet_synt_M	117	238	3.00E-48
PF02773.17	S-AdoMet_synt_C	240	381	1.60E-61

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00789	metK	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Biosynthesis of amino acids	map01230
		Cysteine and methionine metabolism	map00270

Gene Ontology

GO term	Ontology	Name
GO:0006556	biological_process	S-adenosylmethionine biosynthetic process
GO:0004478	molecular_function	methionine adenosyltransferase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	53.214
	SRR3591706	second leaf	18.655
	SRR3591707	mature leaf	11.296
	SRR3591708	Shoot apex	24.024
	SRR3591709	Stem	30.322
	SRR3591710	White floral bud	129.570
	SRR3591711	White flower	40.257
	SRR3591712	Green floral bud	154.131
	SRR3591713	Yellow flower	43.470
SRP173429	SRR8316895	Juvenile bud stage	47.852
	SRR8316896	Juvenile bud stage	99.927
	SRR8316897	Juvenile bud stage	38.460
	SRR8316894	Third green stage	34.472
	SRR8316900	Third green stage	136.613
	SRR8316901	Third green stage	133.569
	SRR8316898	Complete white stage	45.251
	SRR8316899	Complete white stage	71.251
	SRR8316903	Complete white stage	57.034
	SRR8316902	Silver flowering stage	30.489
	SRR8316904	Silver flowering stage	30.978
	SRR8316905	Silver flowering stage	14.162
	SRR8316906	Gold flowering stage	56.474
	SRR8316907	Gold flowering stage	51.173
	SRR8316908	Gold flowering stage	55.345
SRP132670	SRR6706286	Control	127.472
	SRR6706287	Light intensity 50%	132.960
	SRR6706288	Light intensity 20%	126.304
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	70.108
	CNS0095593	Slightly white alabastrum(diploid) 2	59.142
	CNS0095594	Slightly white alabastrum(diploid) 3	78.864
	CNS0095595	Whole white alabastrum(diploid) 2	91.367
	CNS0095596	Whole white alabastrum(diploid) 3	103.237
	CNS0095597	Whole white alabastrum(diploid) 4	138.051
	CNS0095598	Silvery flower (diploied) 1	19.333
	CNS0095599	Silvery flower (diploied) 2	20.130
	CNS0095600	Silvery flower (diploied) 3	50.915
	CNS0095601	Golden flower (diploid) 1	13.056
	CNS0095602	Golden flower (diploid) 2	39.307
	CNS0095603	Golden flower (diploid) 3	41.150
	CNS0095604	Slightly white alabastrum(tetraploid) 1	113.195
	CNS0095605	Slightly white alabastrum(tetraploid) 2	119.326
	CNS0095606	Slightly white alabastrum(tetraploid) 3	40.997
	CNS0095607	Whole white alabastrum(tetraploid) 1	193.834
	CNS0095608	Whole white alabastrum(tetraploid) 2	243.871
	CNS0095609	Whole white alabastrum(tetraploid) 3	169.919
	CNS0095610	Silvery flower (tetraploid) 1	40.474
	CNS0095611	Silvery flower (tetraploid) 2	31.704
	CNS0095612	Silvery flower (tetraploid) 3	55.111
	CNS0095613	Golden flower (tetraploid) 1	31.109
	CNS0095614	Golden flower (tetraploid) 2	41.893
	CNS0095615	Golden flower (tetraploid) 3	54.243
CRA001975	CRR073297	Stem 1	85.017
	CRR073298	Stem 2	81.447
	CRR073299	Stem 3	95.663
	CRR073300	Leaf 1	145.064
	CRR073301	Leaf 2	121.331
	CRR073302	Leaf 3	141.559
	CRR073303	Juvenile bud 1	185.980
	CRR073304	Juvenile bud 2	258.406
	CRR073305	Juvenile bud 3	123.788
	CRR073306	Third green 1	139.924
	CRR073307	Third green 2	130.807
	CRR073308	Third green 3	125.399
	CRR073309	Second white 1	80.716
	CRR073310	Second white 2	65.277
	CRR073311	Second white 3	50.845
	CRR073312	Silver flowering 1	92.855
	CRR073313	Silver flowering 2	140.761
	CRR073314	Silver flowering 3	94.026
	CRR073315	Gold flowering 1	45.802
	CRR073316	Gold flowering 2	27.693
	CRR073317	Gold flowering 3	46.381
	CRR073318	Tawny withering 1	83.487
	CRR073319	Tawny withering 2	62.754
	CRR073320	Tawny withering 3	74.798