Detail information of GWHGAAZE013211


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP15276.16.77853E-53unnamed protein product [Coffea canephora]
trEMBLtr|A0A068V3Q4|A0A068V3Q4_COFCA3E-53Coffea canephora DH200=94 genomic scaffold, scaffold_98 {ECO:0000313|EMBL:CDP15276.1}
TAIR10AT5G03450.17E-36Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene9872220598734186-
GWHAAZE00000003mRNA9872220598734186-
GWHAAZE00000003exon9873404198734186-
GWHAAZE00000003exon9872530698725381-
GWHAAZE00000003exon9872484998724938-
GWHAAZE00000003exon9872455898724602-
GWHAAZE00000003exon9872329998723379-
GWHAAZE00000003exon9872220598722273-
GWHAAZE00000003CDS9873404198734186-
GWHAAZE00000003CDS9872530698725381-
GWHAAZE00000003CDS9872484998724938-
GWHAAZE00000003CDS9872455898724602-
GWHAAZE00000003CDS9872329998723379-
GWHAAZE00000003CDS9872220598722273-
Transcript Sequence

Network for GWHGAAZE013211

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13639.7zf-RING_233791.40E-08
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf7.455
SRR3591706second leaf3.523
SRR3591707mature leaf4.440
SRR3591708Shoot apex8.674
SRR3591709Stem12.791
SRR3591710White floral bud7.768
SRR3591711White flower7.826
SRR3591712Green floral bud9.602
SRR3591713Yellow flower8.658
SRP173429 SRR8316895Juvenile bud stage 9.463
SRR8316896Juvenile bud stage 14.789
SRR8316897Juvenile bud stage 4.662
SRR8316894Third green stage 6.169
SRR8316900Third green stage 12.858
SRR8316901Third green stage 13.072
SRR8316898Complete white stage 4.991
SRR8316899Complete white stage 16.243
SRR8316903Complete white stage 9.979
SRR8316902Silver flowering stage6.360
SRR8316904Silver flowering stage7.578
SRR8316905Silver flowering stage4.547
SRR8316906Gold flowering stage 16.527
SRR8316907Gold flowering stage 15.857
SRR8316908Gold flowering stage 9.219
SRP132670SRR6706286Control10.173
SRR6706287Light intensity 50%11.211
SRR6706288Light intensity 20%11.358
CNP0000432CNS0095592Slightly white alabastrum(diploid) 111.645
CNS0095593Slightly white alabastrum(diploid) 214.153
CNS0095594Slightly white alabastrum(diploid) 311.756
CNS0095595Whole white alabastrum(diploid) 211.964
CNS0095596Whole white alabastrum(diploid) 312.232
CNS0095597Whole white alabastrum(diploid) 47.607
CNS0095598Silvery flower (diploied) 114.109
CNS0095599Silvery flower (diploied) 213.977
CNS0095600Silvery flower (diploied) 313.323
CNS0095601Golden flower (diploid) 115.901
CNS0095602Golden flower (diploid) 217.673
CNS0095603Golden flower (diploid) 314.058
CNS0095604Slightly white alabastrum(tetraploid) 17.151
CNS0095605Slightly white alabastrum(tetraploid) 210.055
CNS0095606Slightly white alabastrum(tetraploid) 312.392
CNS0095607Whole white alabastrum(tetraploid) 14.559
CNS0095608Whole white alabastrum(tetraploid) 24.578
CNS0095609Whole white alabastrum(tetraploid) 37.587
CNS0095610Silvery flower (tetraploid) 110.585
CNS0095611Silvery flower (tetraploid) 27.508
CNS0095612Silvery flower (tetraploid) 36.934
CNS0095613Golden flower (tetraploid) 16.486
CNS0095614Golden flower (tetraploid) 29.340
CNS0095615Golden flower (tetraploid) 33.857
CRA001975CRR073297Stem 117.917
CRR073298Stem 216.540
CRR073299Stem 318.829
CRR073300Leaf 118.708
CRR073301Leaf 215.878
CRR073302Leaf 315.854
CRR073303Juvenile bud 112.441
CRR073304Juvenile bud 29.591
CRR073305Juvenile bud 315.573
CRR073306Third green 14.627
CRR073307Third green 24.747
CRR073308Third green 34.848
CRR073309Second white 14.196
CRR073310Second white 211.276
CRR073311Second white 36.193
CRR073312Silver flowering 18.446
CRR073313Silver flowering 22.613
CRR073314Silver flowering 37.083
CRR073315Gold flowering 17.453
CRR073316Gold flowering 215.715
CRR073317Gold flowering 36.202
CRR073318Tawny withering 118.090
CRR073319Tawny withering 217.986
CRR073320Tawny withering 319.650