Gene detail

Detail information of GWHGAAZE013222

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDP29180.1	0	hypothetical protein JCGZ_16569 [Jatropha curcas]
Swissprot	tr\|O04376\|2A5B_ARATH	0	Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' beta isoform
trEMBL	tr\|A0A067KA68\|A0A067KA68_JATCU	0	Uncharacterized protein {ECO:0000313\|EMBL:KDP29180.1}
TAIR10	AT3G09880.1	1E-155	Protein phosphatase 2A regulatory B subunit family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	98958371	98966553	+
GWHAAZE00000003	mRNA	98958371	98966553	+
GWHAAZE00000003	exon	98958371	98959117	+
GWHAAZE00000003	exon	98966251	98966553	+
GWHAAZE00000003	CDS	98958371	98959117	+
GWHAAZE00000003	CDS	98966251	98966553	+

Transcript Sequence
>GWHTAAZE013236 ATGATTCGAATGATTGCAGTGAATATATTCAGGCCTTTGCCCCCTGCTGCGTATGAGAATACCGGGTCGGAAAATTTGGACCCGGAAGAGGACGAGCCCTATTTGGAGCCTTCTTGGCCGCATTTACAGCTCGTGTACGAGCTGCTTTTGCGTTATGTGGTGTCAACTGATACTGATACCAAGGTAGCTAAACGATATATAGATCACTCGTTTGTTCTAAAAGTGCTTGATTTGTTCGATTCTGAGGACCCTCGAGAGCGGGAATATTTGAAAACTATTCTTCACCGTATATATGGGAAGTTTATGGTTCATCGTCCATTTATTAGGAAAGCTATCAATAATATCTTCTATCGATTTATATACGAGACAGAGAGGCATAGTGGTATCGGTGAGCTGTTGGAGATTCTTGGGAGTATAATTAATGGGTTTGCACTGCCGATGAAAGAGGAGCATAAGTTGTTTCTTGTTCGGGCACTTATACCACTCCATAAACCCAAGCCGGTTTCGTTGTATCATCAGCAGCTATCGTACTGCATTACCCAGTTTGTTGAGAAGGACTATAAGTTAGCGGATACTGTTATAAGGGGTTTATTGAAATACTGGCCAGTGATCAATTGTCAGAAAGAAGTTCTCTTTCTTGGAGAACTTGAGGAAGTGTTGGAGGGAACACAGGCAGCAGAGTTTCAGCGGTGCATGGTTCCTCTTTTCAGACAGATATCTCATTGCCTCAACAGCTCTCACTTTCAGGTTGCAGAGCGAGCCCTCTTTCTGTGGAACAATGAGCACATAGTCAACTTGATCGCCCAGAACAGGGGTGTGATTTTGCCAATCATTTTTGAAGCACTGGAGAAGAACATCCGGTCCCACTGGAATCAGGCGGTCCATGGTCTGACCGTAAATGTCCGCAAAATGTTCCTTGAAATGGATGCTGAGTTGTTCGAGGAGTGCCAGAGGCAGTACGCTGAGAAAGAGGCTCGAGCCGGGGAGGTGGAGGAGCTCCGGGAACTTACGTGGCAGAGACTGGTGGCTGCCGCTGCTCCTGGAGGCTGA

Network for GWHGAAZE013222

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01603.21	B56	2	345	1.50E-164

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K11584	PPP2R5	mRNA surveillance pathway	map03015
		Sphingolipid signaling pathway	map04071
		PI3K-Akt signaling pathway	map04151
		AMPK signaling pathway	map04152
		Meiosis - yeast	map04113
		Oocyte meiosis	map04114
		Adrenergic signaling in cardiomyocytes	map04261
		Dopaminergic synapse	map04728

Gene Ontology

GO term	Ontology	Name
GO:0007165	biological_process	signal transduction
GO:0000159	cellular_component	protein phosphatase type 2A complex
GO:0019888	molecular_function	protein phosphatase regulator activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	17.860
	SRR3591706	second leaf	14.599
	SRR3591707	mature leaf	24.856
	SRR3591708	Shoot apex	11.556
	SRR3591709	Stem	26.448
	SRR3591710	White floral bud	35.911
	SRR3591711	White flower	32.882
	SRR3591712	Green floral bud	39.256
	SRR3591713	Yellow flower	35.122
SRP173429	SRR8316895	Juvenile bud stage	11.079
	SRR8316896	Juvenile bud stage	17.758
	SRR8316897	Juvenile bud stage	11.692
	SRR8316894	Third green stage	6.806
	SRR8316900	Third green stage	23.929
	SRR8316901	Third green stage	20.881
	SRR8316898	Complete white stage	9.001
	SRR8316899	Complete white stage	24.412
	SRR8316903	Complete white stage	15.999
	SRR8316902	Silver flowering stage	10.244
	SRR8316904	Silver flowering stage	16.567
	SRR8316905	Silver flowering stage	7.782
	SRR8316906	Gold flowering stage	24.659
	SRR8316907	Gold flowering stage	24.383
	SRR8316908	Gold flowering stage	35.020
SRP132670	SRR6706286	Control	16.574
	SRR6706287	Light intensity 50%	18.044
	SRR6706288	Light intensity 20%	19.717
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	17.772
	CNS0095593	Slightly white alabastrum(diploid) 2	16.241
	CNS0095594	Slightly white alabastrum(diploid) 3	15.490
	CNS0095595	Whole white alabastrum(diploid) 2	15.986
	CNS0095596	Whole white alabastrum(diploid) 3	18.149
	CNS0095597	Whole white alabastrum(diploid) 4	19.330
	CNS0095598	Silvery flower (diploied) 1	12.172
	CNS0095599	Silvery flower (diploied) 2	8.702
	CNS0095600	Silvery flower (diploied) 3	18.959
	CNS0095601	Golden flower (diploid) 1	12.060
	CNS0095602	Golden flower (diploid) 2	21.547
	CNS0095603	Golden flower (diploid) 3	21.770
	CNS0095604	Slightly white alabastrum(tetraploid) 1	33.837
	CNS0095605	Slightly white alabastrum(tetraploid) 2	34.966
	CNS0095606	Slightly white alabastrum(tetraploid) 3	25.722
	CNS0095607	Whole white alabastrum(tetraploid) 1	43.069
	CNS0095608	Whole white alabastrum(tetraploid) 2	43.161
	CNS0095609	Whole white alabastrum(tetraploid) 3	34.844
	CNS0095610	Silvery flower (tetraploid) 1	34.368
	CNS0095611	Silvery flower (tetraploid) 2	34.323
	CNS0095612	Silvery flower (tetraploid) 3	37.021
	CNS0095613	Golden flower (tetraploid) 1	34.799
	CNS0095614	Golden flower (tetraploid) 2	36.413
	CNS0095615	Golden flower (tetraploid) 3	56.875
CRA001975	CRR073297	Stem 1	17.035
	CRR073298	Stem 2	17.839
	CRR073299	Stem 3	17.375
	CRR073300	Leaf 1	23.601
	CRR073301	Leaf 2	20.448
	CRR073302	Leaf 3	19.553
	CRR073303	Juvenile bud 1	17.509
	CRR073304	Juvenile bud 2	17.916
	CRR073305	Juvenile bud 3	15.488
	CRR073306	Third green 1	20.051
	CRR073307	Third green 2	17.868
	CRR073308	Third green 3	18.764
	CRR073309	Second white 1	15.765
	CRR073310	Second white 2	17.089
	CRR073311	Second white 3	22.145
	CRR073312	Silver flowering 1	15.099
	CRR073313	Silver flowering 2	14.003
	CRR073314	Silver flowering 3	15.003
	CRR073315	Gold flowering 1	10.898
	CRR073316	Gold flowering 2	13.283
	CRR073317	Gold flowering 3	7.347
	CRR073318	Tawny withering 1	17.678
	CRR073319	Tawny withering 2	16.429
	CRR073320	Tawny withering 3	18.332