Gene detail

Detail information of GWHGAAZE013224

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002265893.2	8.43339E-71	PREDICTED: myb-related protein 305 [Vitis vinifera]
Swissprot	tr\|Q53NK6\|MYBA1_ORYSJ	2E-47	Myb-related protein MYBAS1
trEMBL	tr\|A5BED7\|A5BED7_VITVI	4E-70	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN81060.1}
TAIR10	AT3G53200.1	8E-39	myb domain protein 27

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	98975558	98976783	+
GWHAAZE00000003	mRNA	98975558	98976783	+
GWHAAZE00000003	exon	98975558	98975690	+
GWHAAZE00000003	exon	98975926	98976088	+
GWHAAZE00000003	exon	98976194	98976352	+
GWHAAZE00000003	exon	98976444	98976783	+
GWHAAZE00000003	CDS	98975558	98975690	+
GWHAAZE00000003	CDS	98975926	98976088	+
GWHAAZE00000003	CDS	98976194	98976352	+
GWHAAZE00000003	CDS	98976444	98976783	+

Transcript Sequence
>GWHTAAZE013238 ATGGCTTCTCAAGTAGCCATGCAAGAAGAGAACATGCGCAAAGGGCCTTGGTTCGAGGAGGAAGATGAGTGCTTGACCGCTATTGTTACCCTTTTAGGGGAACGGCGATGGGATGCACTGGCAAAAGCATCAGGGTTAAGGAGGAGTGGAAAGAGTTGCAGATTAAGGTGGATGAACTATCTTAGACCTAATTTAAAGCATGGTGATATGAGCGAAGAAGAAGAGCATATCATTCTTCAACTTCACCTTCAATGGGGCAACAAGTCTCTCTCTCTCTCTCTCTCCATTTTATTAGAGTGGTCGAAGATTGCGAGAAAACTGCCGGGAAGAACAGATAATGAAATAAAGAATTACTGGAGGAGTCATTTGAAGAAGAAAGCTTTCATTTTGGAGAAAGGTTTGTTAATGCAATTTGTTATGCTTCTTGCTATGGAAAATGCTAGATCATTACATACTGTTGTAAACACGAAAAAAGAACTAGTGGTTCCAACACACGAAGACATGACTTTAAGGACTAGATATGGGGACTCCACATCCGAAGAGGATGATAGTATTCTGGCGACCTCGGTGGACTCCTCCGATGCACAGGAGTTTTCGAACTTATGGTTTGCGAATTCTCCATACGAAGCGCGGGTTTCAGATTGGATATGGAGCTGGCCTTATGAGCAAAATGAAGGGAAAACTCATGGAGAGAGTTGCAATTTGGACTCTTGTTTTTGTTATTTGGGATCTTTTGAAGAGATTGAGACTAGTTGTTTATGGGACTGTTCCAGTTCTATTTGGGACTTGTATTAA

Network for GWHGAAZE013224

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.32	Myb_DNA-binding	14	61	9.80E-12
PF00249.32	Myb_DNA-binding	68	123	4.40E-12

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	MYB

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.378
	SRR3591707	mature leaf	0.176
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.301
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.387
	SRR3591712	Green floral bud	0.747
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.088
	SRR8316896	Juvenile bud stage	0.283
	SRR8316897	Juvenile bud stage	0.192
	SRR8316894	Third green stage	0.043
	SRR8316900	Third green stage	0.372
	SRR8316901	Third green stage	1.136
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.679
	SRR8316903	Complete white stage	0.214
	SRR8316902	Silver flowering stage	0.054
	SRR8316904	Silver flowering stage	0.050
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.246
	SRR8316908	Gold flowering stage	0.138
SRP132670	SRR6706286	Control	0.625
	SRR6706287	Light intensity 50%	0.561
	SRR6706288	Light intensity 20%	0.545
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.000
	CNS0095593	Slightly white alabastrum(diploid) 2	0.368
	CNS0095594	Slightly white alabastrum(diploid) 3	0.483
	CNS0095595	Whole white alabastrum(diploid) 2	0.612
	CNS0095596	Whole white alabastrum(diploid) 3	1.038
	CNS0095597	Whole white alabastrum(diploid) 4	1.377
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.089
	CNS0095603	Golden flower (diploid) 3	0.146
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.283
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.397
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.406
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.174
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.232
	CNS0095610	Silvery flower (tetraploid) 1	0.130
	CNS0095611	Silvery flower (tetraploid) 2	0.093
	CNS0095612	Silvery flower (tetraploid) 3	0.062
	CNS0095613	Golden flower (tetraploid) 1	0.115
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.044
CRA001975	CRR073297	Stem 1	0.152
	CRR073298	Stem 2	0.086
	CRR073299	Stem 3	0.007
	CRR073300	Leaf 1	0.200
	CRR073301	Leaf 2	0.093
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.008
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.007
	CRR073306	Third green 1	0.011
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.004
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.007
	CRR073312	Silver flowering 1	0.060
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.109
	CRR073315	Gold flowering 1	0.007
	CRR073316	Gold flowering 2	0.443
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.055