Gene detail

Detail information of GWHGAAZE013227

Functional Annotation

Database	Orthologs	Annotation
Nr	CDP19300.1	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9FLX9\|NLE1_ARATH	Notchless protein homolog
trEMBL	tr\|A0A068VEQ6\|A0A068VEQ6_COFCA	Coffea canephora DH200=94 genomic scaffold, scaffold_415 {ECO:0000313\|EMBL:CDP19300.1}
TAIR10	AT5G52820.1	WD-40 repeat family protein / notchless protein, putative

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	98995456	99004498	+
GWHAAZE00000003	mRNA	98995456	99004498	+
GWHAAZE00000003	exon	98995456	98995614	+
GWHAAZE00000003	exon	98996172	98996253	+
GWHAAZE00000003	exon	98996587	98996676	+
GWHAAZE00000003	exon	98998127	98998252	+
GWHAAZE00000003	exon	98998485	98998612	+
GWHAAZE00000003	exon	98998694	98998893	+
GWHAAZE00000003	exon	98999363	98999426	+
GWHAAZE00000003	exon	98999825	98999935	+
GWHAAZE00000003	exon	99001488	99001625	+
GWHAAZE00000003	exon	99001988	99002130	+
GWHAAZE00000003	exon	99003165	99003249	+
GWHAAZE00000003	exon	99003790	99003846	+
GWHAAZE00000003	exon	99004334	99004498	+
GWHAAZE00000003	CDS	98995456	98995614	+
GWHAAZE00000003	CDS	98996172	98996253	+
GWHAAZE00000003	CDS	98996587	98996676	+
GWHAAZE00000003	CDS	98998127	98998252	+
GWHAAZE00000003	CDS	98998485	98998612	+
GWHAAZE00000003	CDS	98998694	98998893	+
GWHAAZE00000003	CDS	98999363	98999426	+
GWHAAZE00000003	CDS	98999825	98999935	+
GWHAAZE00000003	CDS	99001488	99001625	+
GWHAAZE00000003	CDS	99001988	99002130	+
GWHAAZE00000003	CDS	99003165	99003249	+
GWHAAZE00000003	CDS	99003790	99003846	+
GWHAAZE00000003	CDS	99004334	99004417	+
GWHAAZE00000003	three_prime_UTR	99004418	99004498	+

Transcript Sequence
>GWHTAAZE013241 ATGGAGGTCGAAGGTGAAGAGCAACAGAGAGAGATGAACAACAACGTGATGTGCCTCTTAACTGATCCTGAAGGTGCTCCACTGGGTGCACCCCTGTACCTTCCACAGAACGCTGGACCTAAAGAGCTTCAACAAATTGTCAATAAGCTTCGCAACAACGAGGAAAAGTTACCTTATGCTTTCTATATCTCAGACCAAGAGCTTGTTGTACAACTTGGAGCATATTTGCAGAAAAACAAGGTTTCTGTGGAGAAGGTACTTACTATTGTTTATCAACCGCAAGCAGTTTTTCGAATTCGTCCAATCAATCGTTGTTCTTCGACTATTGCCGGTCATACAGAAGCTGTACTTTCAGTTGCTTTTAGTCCTGATGGGCAACAGTTGGCAAGTGGGTCAGGTGACACAACTGTCCGGCTATGGGACTTGGGTACCCAGACCCCACTCTTCACTTGTACAGGGCACAAGAATTGGGTACTTTGTATAGCATGGTCACCAGATGGTAAGCATCTTGTTAGTGGAAGTAAGGCTGGAGAAATTCTATGCTGGGATCCACAGACAGGGAAGCCTTCAGGCAATCCATTTATGGGACACAAAAAATGGATTACTGGTATATCTTGGGAACCAATGCACCTCAATGCTCCATGTCGTCGGTTTGTTACATCTAGTAAAGATGGTGATGCCCGTATATGGGATATTGTATTGAAAAAGTGTGTCATTTGTCTTAGCGGTCACTCACTTGCTGTAACTTGCGTGAAGTGGGGAGGAGATGGAGTTATATATACGGGATCTCAGGATTGTACTATCAAAGTATGGGAAACAACACAGGGAAAGTTAATTCGCGAATTGAAGGGTCATGGGCATTGGGTTAATTCGCTGGCCTTGAGCACTGAATATGTTCTTCGAACTGGAGCTTTTGATCATACTCACAAACACTTTTCTTCTTCAGAGGAAATGAAGGAGGCAGCTTTAGCAAGGTACAACAAAATGAAAGGCAGTGCCCCTGAAAGATTGGTTTCAGGGTCTGATGATTTTACCATGTTCCTCTGGGAACCTGCTGTCAGCAAACACCCCAAAACTCGCATGACGGGTCATCAACAGCTTGTGAACCATGTTTACTTTTCTCCTGATGGGCAATGGATTGCTAGTGCCTCTTTTGACAAGTCAGTCAAGTTATGGAACGGTATCACCGGAAAATTTGTTGCTGCTTTTCGGGGCCATGTGGGTCCCGTTTATCAGATAAGGCTTTTGATCATGCTTCATTTTGTGTTGCAGCTGGTCGCCGACAGTAGGCTTCTTTTAAGCGGCAGCAAAGACTCGACGCTAAAGGTTTGGGATATCCGGACTCAGAAGTTGAAACAAGATCTTCCTGGCCATGCAGACGAGGTTTTTGCAGTGGACTGGAGTCCTGATGGCGAGAAAGTAGCATCTGGGGGCAGGGACCGAGTCTTGAAGCTATGGATGAGCTAAACAGAGCCAACCTTTCATCATCCTGTGGAGAGCCCAAAAAAAAAAGGAGGTACACACGAAATACCAAAAACAAAACTGACA

Network for GWHGAAZE013227

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08154.13	NLE	20	76	7.80E-11
PF00400.33	WD40	104	141	5.40E-09
PF00400.33	WD40	146	183	4.20E-07
PF00400.33	WD40	194	231	0.0065
PF00400.33	WD40	236	271	6.90E-06
PF00400.33	WD40	276	349	0.076
PF00400.33	WD40	361	393	2.00E-08
PF00400.33	WD40	398	445	0.0012
PF00400.33	WD40	452	486	9.70E-07

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	19.250
	SRR3591706	second leaf	8.849
	SRR3591707	mature leaf	8.328
	SRR3591708	Shoot apex	22.065
	SRR3591709	Stem	13.277
	SRR3591710	White floral bud	14.798
	SRR3591711	White flower	27.994
	SRR3591712	Green floral bud	19.860
	SRR3591713	Yellow flower	18.438
SRP173429	SRR8316895	Juvenile bud stage	11.995
	SRR8316896	Juvenile bud stage	16.199
	SRR8316897	Juvenile bud stage	8.324
	SRR8316894	Third green stage	5.881
	SRR8316900	Third green stage	15.322
	SRR8316901	Third green stage	12.511
	SRR8316898	Complete white stage	2.681
	SRR8316899	Complete white stage	13.710
	SRR8316903	Complete white stage	3.739
	SRR8316902	Silver flowering stage	4.882
	SRR8316904	Silver flowering stage	5.015
	SRR8316905	Silver flowering stage	1.987
	SRR8316906	Gold flowering stage	7.909
	SRR8316907	Gold flowering stage	9.915
	SRR8316908	Gold flowering stage	15.141
SRP132670	SRR6706286	Control	12.113
	SRR6706287	Light intensity 50%	12.717
	SRR6706288	Light intensity 20%	13.096
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	10.070
	CNS0095593	Slightly white alabastrum(diploid) 2	9.534
	CNS0095594	Slightly white alabastrum(diploid) 3	10.750
	CNS0095595	Whole white alabastrum(diploid) 2	8.022
	CNS0095596	Whole white alabastrum(diploid) 3	9.527
	CNS0095597	Whole white alabastrum(diploid) 4	6.871
	CNS0095598	Silvery flower (diploied) 1	10.070
	CNS0095599	Silvery flower (diploied) 2	7.499
	CNS0095600	Silvery flower (diploied) 3	7.170
	CNS0095601	Golden flower (diploid) 1	7.315
	CNS0095602	Golden flower (diploid) 2	8.245
	CNS0095603	Golden flower (diploid) 3	6.414
	CNS0095604	Slightly white alabastrum(tetraploid) 1	10.997
	CNS0095605	Slightly white alabastrum(tetraploid) 2	10.278
	CNS0095606	Slightly white alabastrum(tetraploid) 3	17.574
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.144
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.791
	CNS0095609	Whole white alabastrum(tetraploid) 3	12.537
	CNS0095610	Silvery flower (tetraploid) 1	11.149
	CNS0095611	Silvery flower (tetraploid) 2	9.711
	CNS0095612	Silvery flower (tetraploid) 3	6.301
	CNS0095613	Golden flower (tetraploid) 1	5.530
	CNS0095614	Golden flower (tetraploid) 2	7.730
	CNS0095615	Golden flower (tetraploid) 3	4.275
CRA001975	CRR073297	Stem 1	15.815
	CRR073298	Stem 2	14.372
	CRR073299	Stem 3	13.405
	CRR073300	Leaf 1	11.818
	CRR073301	Leaf 2	12.467
	CRR073302	Leaf 3	14.658
	CRR073303	Juvenile bud 1	12.578
	CRR073304	Juvenile bud 2	6.143
	CRR073305	Juvenile bud 3	11.839
	CRR073306	Third green 1	1.145
	CRR073307	Third green 2	1.410
	CRR073308	Third green 3	2.036
	CRR073309	Second white 1	2.873
	CRR073310	Second white 2	4.277
	CRR073311	Second white 3	3.209
	CRR073312	Silver flowering 1	3.230
	CRR073313	Silver flowering 2	2.017
	CRR073314	Silver flowering 3	2.522
	CRR073315	Gold flowering 1	6.671
	CRR073316	Gold flowering 2	8.685
	CRR073317	Gold flowering 3	4.967
	CRR073318	Tawny withering 1	13.262
	CRR073319	Tawny withering 2	10.161
	CRR073320	Tawny withering 3	16.263