Detail information of GWHGAAZE013247


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006339096.11.3726E-149PREDICTED: uncharacterized protein LOC102590922 [Solanum tuberosum]
Swissprottr|F4KBP5|CHR4_ARATH0.00000008Protein CHROMATIN REMODELING 4 {ECO:0000303|PubMed:16547115}
trEMBLtr|M1CQA5|M1CQA5_SOLTU9E-152Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400072425}
TAIR10AT2G36720.13E-96Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene9942506299428624-
GWHAAZE00000003mRNA9942506299428624-
GWHAAZE00000003exon9942506299425301-
GWHAAZE00000003exon9942577099425826-
GWHAAZE00000003exon9942597199426028-
GWHAAZE00000003exon9942630299426518-
GWHAAZE00000003exon9942829699428462-
GWHAAZE00000003exon9942856699428624-
GWHAAZE00000003CDS9942856699428624-
GWHAAZE00000003CDS9942829699428462-
GWHAAZE00000003CDS9942630299426518-
GWHAAZE00000003CDS9942597199426028-
GWHAAZE00000003CDS9942577099425826-
GWHAAZE00000003CDS9942506299425301-
Transcript Sequence

Network for GWHGAAZE013247

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF16135.6TDBD3371.10E-07
PF00628.30PHD54952.00E-08
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyPHD
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf12.807
SRR3591706second leaf17.079
SRR3591707mature leaf15.038
SRR3591708Shoot apex20.518
SRR3591709Stem14.751
SRR3591710White floral bud16.860
SRR3591711White flower20.453
SRR3591712Green floral bud19.083
SRR3591713Yellow flower15.107
SRP173429 SRR8316895Juvenile bud stage 11.435
SRR8316896Juvenile bud stage 17.361
SRR8316897Juvenile bud stage 10.685
SRR8316894Third green stage 8.570
SRR8316900Third green stage 16.228
SRR8316901Third green stage 16.704
SRR8316898Complete white stage 2.872
SRR8316899Complete white stage 16.081
SRR8316903Complete white stage 6.959
SRR8316902Silver flowering stage3.761
SRR8316904Silver flowering stage7.229
SRR8316905Silver flowering stage2.391
SRR8316906Gold flowering stage 7.080
SRR8316907Gold flowering stage 8.109
SRR8316908Gold flowering stage 5.976
SRP132670SRR6706286Control5.124
SRR6706287Light intensity 50%6.448
SRR6706288Light intensity 20%6.267
CNP0000432CNS0095592Slightly white alabastrum(diploid) 16.484
CNS0095593Slightly white alabastrum(diploid) 212.098
CNS0095594Slightly white alabastrum(diploid) 37.856
CNS0095595Whole white alabastrum(diploid) 27.773
CNS0095596Whole white alabastrum(diploid) 37.236
CNS0095597Whole white alabastrum(diploid) 47.157
CNS0095598Silvery flower (diploied) 112.541
CNS0095599Silvery flower (diploied) 27.850
CNS0095600Silvery flower (diploied) 35.928
CNS0095601Golden flower (diploid) 113.266
CNS0095602Golden flower (diploid) 28.430
CNS0095603Golden flower (diploid) 39.079
CNS0095604Slightly white alabastrum(tetraploid) 114.828
CNS0095605Slightly white alabastrum(tetraploid) 210.999
CNS0095606Slightly white alabastrum(tetraploid) 319.353
CNS0095607Whole white alabastrum(tetraploid) 18.899
CNS0095608Whole white alabastrum(tetraploid) 26.948
CNS0095609Whole white alabastrum(tetraploid) 314.370
CNS0095610Silvery flower (tetraploid) 114.243
CNS0095611Silvery flower (tetraploid) 210.094
CNS0095612Silvery flower (tetraploid) 316.208
CNS0095613Golden flower (tetraploid) 17.839
CNS0095614Golden flower (tetraploid) 210.324
CNS0095615Golden flower (tetraploid) 36.655
CRA001975CRR073297Stem 110.849
CRR073298Stem 29.740
CRR073299Stem 33.520
CRR073300Leaf 19.424
CRR073301Leaf 27.478
CRR073302Leaf 33.884
CRR073303Juvenile bud 12.766
CRR073304Juvenile bud 21.792
CRR073305Juvenile bud 32.020
CRR073306Third green 12.612
CRR073307Third green 21.212
CRR073308Third green 31.768
CRR073309Second white 11.797
CRR073310Second white 21.744
CRR073311Second white 32.834
CRR073312Silver flowering 11.793
CRR073313Silver flowering 20.329
CRR073314Silver flowering 30.715
CRR073315Gold flowering 11.715
CRR073316Gold flowering 23.464
CRR073317Gold flowering 31.412
CRR073318Tawny withering 14.883
CRR073319Tawny withering 26.172
CRR073320Tawny withering 32.693