Detail information of GWHGAAZE013252


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009777877.17.20042E-60PREDICTED: uncharacterized protein LOC104227349 isoform X2 [Nicotiana sylvestris]
trEMBLtr|W9R8F9|W9R8F9_9ROSA5E-59Uncharacterized protein {ECO:0000313|EMBL:EXB75938.1}
TAIR10AT2G27930.19E-40PLATZ transcription factor family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene9950299099505017-
GWHAAZE00000003mRNA9950299099505017-
GWHAAZE00000003exon9950493799505017-
GWHAAZE00000003exon9950299099503304-
GWHAAZE00000003CDS9950493799505017-
GWHAAZE00000003CDS9950299099503304-
Transcript Sequence

Network for GWHGAAZE013252

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04640.15PLATZ291011.80E-30
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyPLATZ

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf3.513
SRR3591706second leaf0.591
SRR3591707mature leaf0.206
SRR3591708Shoot apex0.232
SRR3591709Stem3.375
SRR3591710White floral bud0.000
SRR3591711White flower0.000
SRR3591712Green floral bud1.028
SRR3591713Yellow flower0.000
SRP173429 SRR8316895Juvenile bud stage 0.318
SRR8316896Juvenile bud stage 0.217
SRR8316897Juvenile bud stage 0.298
SRR8316894Third green stage 0.149
SRR8316900Third green stage 0.916
SRR8316901Third green stage 1.329
SRR8316898Complete white stage 0.026
SRR8316899Complete white stage 0.647
SRR8316903Complete white stage 0.062
SRR8316902Silver flowering stage0.716
SRR8316904Silver flowering stage1.235
SRR8316905Silver flowering stage0.155
SRR8316906Gold flowering stage 1.004
SRR8316907Gold flowering stage 2.439
SRR8316908Gold flowering stage 1.179
SRP132670SRR6706286Control0.331
SRR6706287Light intensity 50%0.475
SRR6706288Light intensity 20%0.236
CNP0000432CNS0095592Slightly white alabastrum(diploid) 12.032
CNS0095593Slightly white alabastrum(diploid) 22.123
CNS0095594Slightly white alabastrum(diploid) 33.251
CNS0095595Whole white alabastrum(diploid) 20.950
CNS0095596Whole white alabastrum(diploid) 30.773
CNS0095597Whole white alabastrum(diploid) 40.876
CNS0095598Silvery flower (diploied) 10.688
CNS0095599Silvery flower (diploied) 20.000
CNS0095600Silvery flower (diploied) 30.200
CNS0095601Golden flower (diploid) 10.000
CNS0095602Golden flower (diploid) 20.094
CNS0095603Golden flower (diploid) 30.174
CNS0095604Slightly white alabastrum(tetraploid) 12.012
CNS0095605Slightly white alabastrum(tetraploid) 20.636
CNS0095606Slightly white alabastrum(tetraploid) 31.811
CNS0095607Whole white alabastrum(tetraploid) 11.225
CNS0095608Whole white alabastrum(tetraploid) 20.315
CNS0095609Whole white alabastrum(tetraploid) 31.432
CNS0095610Silvery flower (tetraploid) 10.273
CNS0095611Silvery flower (tetraploid) 20.000
CNS0095612Silvery flower (tetraploid) 30.119
CNS0095613Golden flower (tetraploid) 10.000
CNS0095614Golden flower (tetraploid) 20.080
CNS0095615Golden flower (tetraploid) 30.000
CRA001975CRR073297Stem 10.000
CRR073298Stem 20.023
CRR073299Stem 30.678
CRR073300Leaf 10.830
CRR073301Leaf 20.586
CRR073302Leaf 30.650
CRR073303Juvenile bud 11.002
CRR073304Juvenile bud 20.102
CRR073305Juvenile bud 30.307
CRR073306Third green 10.177
CRR073307Third green 20.000
CRR073308Third green 30.353
CRR073309Second white 10.000
CRR073310Second white 20.152
CRR073311Second white 30.000
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.394
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.000
CRR073316Gold flowering 21.008
CRR073317Gold flowering 30.000
CRR073318Tawny withering 12.052
CRR073319Tawny withering 21.181
CRR073320Tawny withering 30.421