Gene detail

Detail information of GWHGAAZE013261

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_006430176.1	hypothetical protein CICLE_v10011285mg [Citrus clementina]
Swissprot	tr\|P37107\|SR54C_ARATH	Signal recognition particle 54 kDa protein, chloroplastic (Precursor)
trEMBL	tr\|V4T1N3\|V4T1N3_9ROSI	Uncharacterized protein {ECO:0000313\|EMBL:ESR43416.1}
TAIR10	AT5G03940.1	chloroplast signal recognition particle 54 kDa subunit

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	99673807	99680800	+
GWHAAZE00000003	mRNA	99673807	99680800	+
GWHAAZE00000003	exon	99673807	99674064	+
GWHAAZE00000003	exon	99674183	99674252	+
GWHAAZE00000003	exon	99674756	99674925	+
GWHAAZE00000003	exon	99675040	99675142	+
GWHAAZE00000003	exon	99678284	99678384	+
GWHAAZE00000003	exon	99678474	99678611	+
GWHAAZE00000003	exon	99678695	99678838	+
GWHAAZE00000003	exon	99679320	99679395	+
GWHAAZE00000003	exon	99680280	99680365	+
GWHAAZE00000003	exon	99680621	99680800	+
GWHAAZE00000003	CDS	99673807	99674064	+
GWHAAZE00000003	CDS	99674183	99674252	+
GWHAAZE00000003	CDS	99674756	99674925	+
GWHAAZE00000003	CDS	99675040	99675142	+
GWHAAZE00000003	CDS	99678284	99678384	+
GWHAAZE00000003	CDS	99678474	99678611	+
GWHAAZE00000003	CDS	99678695	99678838	+
GWHAAZE00000003	CDS	99679320	99679395	+
GWHAAZE00000003	CDS	99680280	99680365	+
GWHAAZE00000003	CDS	99680621	99680800	+

Transcript Sequence
>GWHTAAZE013275 ATGTTTCCCTCGGACAGTGGGAATGAATTCTATTACTTGATTTTATTGACAGATATGCATTCATTGGGGCTGAAACTTTCTTCATCTTATTGTTTGGTGATGCAGATTGTGCGGGATGAGCTTGTGAAACTAATGGGTGGAGAGGTTTCTGAACTGGTTTTTGCGAAATCTGGCCCCACTGTTATTTTACTTGCTGGACTGCAAGGTGTTGGAAAGACGACTGTTAGTGCAAAGTTAGCTTTCTACCTTAAGAAACAGGGGAAGAGTTGCATGCTTATTGCTGGAGATGTCTACAGGCCTGCTGCTATTGACCAACTTGTTATTCTGGGATCGCTTAATTCATTCTCATATTCAGTGATAAGCTTGGGACAGGTGGGTGTGCCTGTTTATACAGCAGGGAACGAGGTTAAACCTGCAGAAATAGCTATGCAAGGTCTTAAAGAGGCTAAAAAGAACAATGTAGATGTGGTCATAATGGATACTGCTGGCAGACTCCAGATAGACAAACCAATGATGGATGAATTGAAAGCAGTGAAGCGGGCATTGAATCCCACAGAAGTTTTGCTTGTTGTTGATGCAATGACTGGTCAAGAAGCTGCAGCCTTAGTCACATCATTTAATCTTGAAATTGGAATTACTGGTGCCATTTTGACAAAGCTAGATGGGGATTCCAGAGGTGGAGCAGCTTTGACTGTTAAAGAGGTATCAGGAAAGCCAATCAAGCTTGTAGGGCGGGGAGAGCGCATGGAGGACCTTGAACCTTTCTATCCAGATCGTATGGCGGGACGAATCTTAGGCATGGGAGATGTTCTATCATTTGTGGAGAAAGCACAAGAAGTTATGCGTCAAGAAGATGCAGAAGAATTGCAGAAGAAGATCATGAGTGCAGAATTTGACTTCAATGACTTCCTAAAGCAAACTCGTGCAGTTGCACGTATGGGTTCCATGTCCCGTGTTATTGGAATGATTCCTGGCATGGGGAAGATTTCTCCTGCACAAGTTCGAGAGGCAGAAAAGAACTTAAAGATAATGGAAGCACTGATTGAAGCAATGACCCCAGAGGAAAGGGAGAAACCAGAATTGTTAGCAGAATCCCTTGTCAGGAGAAAGCGAGTTGCACAAGCATCTGGGAGAACAGAGCAGCAGGTGAGTCAAGTTGTTGCTCAACTTTTCCAAATGCGCCTTAAGATGAAGAATTTAATGGGTTCAATGCAAGGTGGATCCGGTCCTGAGCTGAGCAATATTGAAGAAGCACTTAAATCCGAACAGGTGGTTTTTTGTTTTTCTCCTTACGTTCTCATTGTGTGTGCCTTTATTAGAGTTTGA

Network for GWHGAAZE013261

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00448.23	SRP54	59	266	1.70E-69
PF02978.20	SRP_SPB	297	394	2.30E-24

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03106	SRP54, ffh	Protein export	map03060
		Bacterial secretion system	map03070
		Quorum sensing	map02024

Gene Ontology

GO term	Ontology	Name
GO:0006614	biological_process	SRP-dependent cotranslational protein targeting to membrane
GO:0048500	cellular_component	signal recognition particle
GO:0005525	molecular_function	GTP binding
GO:0008312	molecular_function	7S RNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	22.948
	SRR3591706	second leaf	48.421
	SRR3591707	mature leaf	35.862
	SRR3591708	Shoot apex	38.217
	SRR3591709	Stem	14.992
	SRR3591710	White floral bud	14.231
	SRR3591711	White flower	14.764
	SRR3591712	Green floral bud	15.367
	SRR3591713	Yellow flower	12.734
SRP173429	SRR8316895	Juvenile bud stage	15.536
	SRR8316896	Juvenile bud stage	20.308
	SRR8316897	Juvenile bud stage	12.780
	SRR8316894	Third green stage	9.070
	SRR8316900	Third green stage	28.444
	SRR8316901	Third green stage	31.300
	SRR8316898	Complete white stage	8.489
	SRR8316899	Complete white stage	25.149
	SRR8316903	Complete white stage	11.444
	SRR8316902	Silver flowering stage	4.111
	SRR8316904	Silver flowering stage	4.485
	SRR8316905	Silver flowering stage	2.501
	SRR8316906	Gold flowering stage	11.971
	SRR8316907	Gold flowering stage	12.607
	SRR8316908	Gold flowering stage	12.645
SRP132670	SRR6706286	Control	24.989
	SRR6706287	Light intensity 50%	26.679
	SRR6706288	Light intensity 20%	27.567
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	10.512
	CNS0095593	Slightly white alabastrum(diploid) 2	8.894
	CNS0095594	Slightly white alabastrum(diploid) 3	8.031
	CNS0095595	Whole white alabastrum(diploid) 2	11.108
	CNS0095596	Whole white alabastrum(diploid) 3	7.387
	CNS0095597	Whole white alabastrum(diploid) 4	9.452
	CNS0095598	Silvery flower (diploied) 1	21.540
	CNS0095599	Silvery flower (diploied) 2	19.225
	CNS0095600	Silvery flower (diploied) 3	13.229
	CNS0095601	Golden flower (diploid) 1	19.169
	CNS0095602	Golden flower (diploid) 2	13.592
	CNS0095603	Golden flower (diploid) 3	12.490
	CNS0095604	Slightly white alabastrum(tetraploid) 1	15.379
	CNS0095605	Slightly white alabastrum(tetraploid) 2	12.509
	CNS0095606	Slightly white alabastrum(tetraploid) 3	28.185
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.766
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.873
	CNS0095609	Whole white alabastrum(tetraploid) 3	26.899
	CNS0095610	Silvery flower (tetraploid) 1	22.579
	CNS0095611	Silvery flower (tetraploid) 2	28.318
	CNS0095612	Silvery flower (tetraploid) 3	22.033
	CNS0095613	Golden flower (tetraploid) 1	8.640
	CNS0095614	Golden flower (tetraploid) 2	13.925
	CNS0095615	Golden flower (tetraploid) 3	4.805
CRA001975	CRR073297	Stem 1	27.382
	CRR073298	Stem 2	22.678
	CRR073299	Stem 3	25.421
	CRR073300	Leaf 1	26.208
	CRR073301	Leaf 2	25.332
	CRR073302	Leaf 3	20.748
	CRR073303	Juvenile bud 1	26.464
	CRR073304	Juvenile bud 2	19.358
	CRR073305	Juvenile bud 3	23.153
	CRR073306	Third green 1	4.688
	CRR073307	Third green 2	2.434
	CRR073308	Third green 3	3.233
	CRR073309	Second white 1	6.889
	CRR073310	Second white 2	8.539
	CRR073311	Second white 3	7.154
	CRR073312	Silver flowering 1	3.650
	CRR073313	Silver flowering 2	2.735
	CRR073314	Silver flowering 3	2.519
	CRR073315	Gold flowering 1	45.434
	CRR073316	Gold flowering 2	62.154
	CRR073317	Gold flowering 3	30.570
	CRR073318	Tawny withering 1	10.542
	CRR073319	Tawny withering 2	9.508
	CRR073320	Tawny withering 3	12.261