Gene detail

Detail information of GWHGAAZE013271

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010644815.1	8.40159E-44	PREDICTED: F-box/LRR-repeat protein At4g14103-like isoform X2 [Vitis vinifera]
Swissprot	tr\|Q9FZ52\|FDL3_ARATH	6E-32	F-box/FBD/LRR-repeat protein At1g16930
trEMBL	tr\|F6HR85\|F6HR85_VITVI	1E-44	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB57193.1}
TAIR10	AT1G16930.1	7E-27	F-box/RNI-like/FBD-like domains-containing protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	99849060	99849998	+
GWHAAZE00000003	mRNA	99849060	99849998	+
GWHAAZE00000003	exon	99849060	99849205	+
GWHAAZE00000003	exon	99849236	99849998	+
GWHAAZE00000003	CDS	99849060	99849205	+
GWHAAZE00000003	CDS	99849236	99849998	+

Transcript Sequence
>GWHTAAZE013285 ATGCAAGACAGGCTAAGCAATTTTCCTGATGCAATTCTGACTCACATACTTTCATTTCTTAAAACAAAGGATGCTGTGAGAACTAGCATTCTATCAACACGGTGGAAGTCTGTTTGGGCTTCTGTGCCTACTCTTAAGTTGAGCAATTGGGTAAATGATGACAAAGAAATTAATGCTAGATTATCGGCATTTTTGGATCGAGTATTGATGGATTGCAAGGAACCTTCTTTTGAAAAGATAGCTATATGTGGTCAAAATCTTGATCCTTGTCACGTAAAATCATGGATAGGTGGTGCCATTAAGCGGAATGTTTGTGAGCTAGTGGTTATGACTAAAAAATGCTTTGTTAACCCACCTTGCAAGTTGACCCAGAGTTTGTTTTCTTGCAATAAATTAGTGGTGTTGAAATTAGGCTTGGATATGGTTCTATATTTTCCGATGACTTGCCCATGTTTTCCAAATCTAAAGGTTCTCGAATTATATTCCCTTTTGTTAAAAAATGATAACTCAGCTCAAAATCTAGTTTCCTGCTGTCCTGTTCTCAAAGATTTGGTTATAGTTAGAGAGAATTGGGATGATTTGGGAACTTTGGATGTCAACTCTCGCTCACTAAAAAAGTTGTCACTGCGTGTTAACATGGGTAGGCAACGTTTCGTACGGAAATTGGCAGTTGATGCCCCGGGTCTTGAATCTATTGTTATTGAAGATATGGTGACACAAGAGTTTGTGATGAGGGACATATCATCCCTAATAAAAGCAAAACTTAATCTCTCGAACTGCCGTTCTTCATTCCAAACTTATGGCAATTATGGAATGCGTTTGTTTGAGCTTCTTAGAAGGATTTCGAATGTTAAGTGTCTAATTTTGTCATCTTCCACACTGAAGGTAAGCCTATGGTTTTGTCTATGA

Network for GWHGAAZE013271

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00646.34	F-box	4	42	2.10E-07

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.198
	SRR3591708	Shoot apex	0.101
	SRR3591709	Stem	0.132
	SRR3591710	White floral bud	7.516
	SRR3591711	White flower	0.335
	SRR3591712	Green floral bud	0.968
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	1.731
	SRR8316896	Juvenile bud stage	1.667
	SRR8316897	Juvenile bud stage	0.223
	SRR8316894	Third green stage	0.259
	SRR8316900	Third green stage	0.443
	SRR8316901	Third green stage	0.704
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.042
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.041
	SRR6706287	Light intensity 50%	0.104
	SRR6706288	Light intensity 20%	0.014
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.398
	CNS0095593	Slightly white alabastrum(diploid) 2	0.929
	CNS0095594	Slightly white alabastrum(diploid) 3	0.662
	CNS0095595	Whole white alabastrum(diploid) 2	0.469
	CNS0095596	Whole white alabastrum(diploid) 3	0.716
	CNS0095597	Whole white alabastrum(diploid) 4	1.550
	CNS0095598	Silvery flower (diploied) 1	0.152
	CNS0095599	Silvery flower (diploied) 2	0.695
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.082
	CNS0095603	Golden flower (diploid) 3	0.111
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.265
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.458
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.060
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.490
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.975
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.530
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.025
	CNS0095612	Silvery flower (tetraploid) 3	0.095
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.036
CRA001975	CRR073297	Stem 1	0.272
	CRR073298	Stem 2	0.076
	CRR073299	Stem 3	0.121
	CRR073300	Leaf 1	0.128
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.272
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.060
	CRR073308	Third green 3	0.102
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.086
	CRR073312	Silver flowering 1	0.434
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.412
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.041
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000