Gene detail

Detail information of GWHGAAZE013276

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDP42725.1	0	hypothetical protein JCGZ_23665 [Jatropha curcas]
Swissprot	tr\|Q9SJM7\|URH1_ARATH	1E-174	Uridine nucleosidase 1
trEMBL	tr\|A0A067LE21\|A0A067LE21_JATCU	0	Uncharacterized protein {ECO:0000313\|EMBL:KDP42725.1}
TAIR10	AT2G36310.1	3E-139	uridine-ribohydrolase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	99955782	99962667	+
GWHAAZE00000003	mRNA	99955782	99962667	+
GWHAAZE00000003	exon	99955782	99955889	+
GWHAAZE00000003	exon	99956027	99956086	+
GWHAAZE00000003	exon	99959000	99959182	+
GWHAAZE00000003	exon	99959616	99959720	+
GWHAAZE00000003	exon	99960836	99960932	+
GWHAAZE00000003	exon	99961042	99961149	+
GWHAAZE00000003	exon	99961293	99961428	+
GWHAAZE00000003	exon	99962553	99962667	+
GWHAAZE00000003	CDS	99955782	99955889	+
GWHAAZE00000003	CDS	99956027	99956086	+
GWHAAZE00000003	CDS	99959000	99959182	+
GWHAAZE00000003	CDS	99959616	99959720	+
GWHAAZE00000003	CDS	99960836	99960932	+
GWHAAZE00000003	CDS	99961042	99961149	+
GWHAAZE00000003	CDS	99961293	99961428	+
GWHAAZE00000003	CDS	99962553	99962667	+

Transcript Sequence
>GWHTAAZE013290 ATGGCAATCTTAATGGCTTTCCAAACACCAAATTTGGAGATCTTAGGCTTGACGACAGTATTTGGTAATGTCACTACAGAAGATGCCACCCGCAATGCCCTGGTTCTGTGTGAGATCGCAGGATTTCCAGGAGTTCCTGTGGCAGAAGGTAGCCCTGAACCTCTAAAGGGTGGGAGACCACGTGTTGCAGACTTTGTTCATGGTTCAGATGGAATGGGGAACATAAATTGCCCTTCTCCAAAATTCAACAAAATAGAGATGAGTGCGTCTGAATTTTTAGTTGAGAAGGTCTCTGAATATCCCGGTGATGTATGTATTCTTGCTTTAGGGCCTCTCACCAACTTGGCTTTGGCTGTCAAAAGGGACTCGTCATTTGCAAGCAAGGTGAAGAGAATAGTTATTCTTGGTGGAGCTTTCTTTGCACTGGGAAATGTAAATCCTGCTGCTGAAGCAAATATTTATGGTGACCCAGAAGCAGCAGATATTGTGTTCACCTGTGGGGCCAATATTGTTGTTGTCGGCATAAACATTACAACACAAGTCCAATTGACAGATCATGATATCGATGAATTGCGGAAGTCCGGAGGAAAACACGCTCAATTCTTGAGTGACATGATCAAATTCTATCGTGATTGGCACGTAAAATCTGATGGTGTATATGGAATTTTTCTTCACGATCCCGTCAGTTTTGTGGCATTAGTTCGGCCGGATCTCTTCACATACAAGGTGGGGGTTGTGAGGGTTGAGACTCAAGGCATCTGCTTAGGCCATACACTAATGGACCAAGGCCTAAAAAAATACAGATGGAATTCAGACAACCCGTGGTCAGGCTTTTCCCCCATTTCAGTTGCATGGACAGTTGATGTCAAAGAGGTTGTCGATTACATCAAAAACCGGTTAATGACAGCATGA

Network for GWHGAAZE013276

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01156.20	IU_nuc_hydro	1	293	4.40E-69

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01240	URH1	Metabolic pathways	map01100
		Pyrimidine metabolism	map00240
		Nicotinate and nicotinamide metabolism	map00760

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	18.793
	SRR3591706	second leaf	11.926
	SRR3591707	mature leaf	5.478
	SRR3591708	Shoot apex	20.230
	SRR3591709	Stem	23.372
	SRR3591710	White floral bud	24.812
	SRR3591711	White flower	58.063
	SRR3591712	Green floral bud	28.513
	SRR3591713	Yellow flower	203.565
SRP173429	SRR8316895	Juvenile bud stage	17.940
	SRR8316896	Juvenile bud stage	30.697
	SRR8316897	Juvenile bud stage	11.091
	SRR8316894	Third green stage	10.115
	SRR8316900	Third green stage	41.890
	SRR8316901	Third green stage	35.486
	SRR8316898	Complete white stage	58.310
	SRR8316899	Complete white stage	40.366
	SRR8316903	Complete white stage	65.708
	SRR8316902	Silver flowering stage	87.369
	SRR8316904	Silver flowering stage	118.697
	SRR8316905	Silver flowering stage	51.543
	SRR8316906	Gold flowering stage	307.207
	SRR8316907	Gold flowering stage	388.809
	SRR8316908	Gold flowering stage	313.231
SRP132670	SRR6706286	Control	38.156
	SRR6706287	Light intensity 50%	43.227
	SRR6706288	Light intensity 20%	48.253
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	29.258
	CNS0095593	Slightly white alabastrum(diploid) 2	22.921
	CNS0095594	Slightly white alabastrum(diploid) 3	33.452
	CNS0095595	Whole white alabastrum(diploid) 2	30.036
	CNS0095596	Whole white alabastrum(diploid) 3	34.739
	CNS0095597	Whole white alabastrum(diploid) 4	38.221
	CNS0095598	Silvery flower (diploied) 1	60.799
	CNS0095599	Silvery flower (diploied) 2	61.105
	CNS0095600	Silvery flower (diploied) 3	203.020
	CNS0095601	Golden flower (diploid) 1	109.848
	CNS0095602	Golden flower (diploid) 2	254.632
	CNS0095603	Golden flower (diploid) 3	243.625
	CNS0095604	Slightly white alabastrum(tetraploid) 1	31.351
	CNS0095605	Slightly white alabastrum(tetraploid) 2	32.178
	CNS0095606	Slightly white alabastrum(tetraploid) 3	24.175
	CNS0095607	Whole white alabastrum(tetraploid) 1	31.683
	CNS0095608	Whole white alabastrum(tetraploid) 2	31.698
	CNS0095609	Whole white alabastrum(tetraploid) 3	39.340
	CNS0095610	Silvery flower (tetraploid) 1	241.734
	CNS0095611	Silvery flower (tetraploid) 2	146.237
	CNS0095612	Silvery flower (tetraploid) 3	226.117
	CNS0095613	Golden flower (tetraploid) 1	290.416
	CNS0095614	Golden flower (tetraploid) 2	213.847
	CNS0095615	Golden flower (tetraploid) 3	340.704
CRA001975	CRR073297	Stem 1	21.432
	CRR073298	Stem 2	22.427
	CRR073299	Stem 3	21.865
	CRR073300	Leaf 1	26.299
	CRR073301	Leaf 2	18.011
	CRR073302	Leaf 3	18.449
	CRR073303	Juvenile bud 1	24.099
	CRR073304	Juvenile bud 2	19.136
	CRR073305	Juvenile bud 3	14.276
	CRR073306	Third green 1	23.099
	CRR073307	Third green 2	25.521
	CRR073308	Third green 3	20.875
	CRR073309	Second white 1	137.420
	CRR073310	Second white 2	136.670
	CRR073311	Second white 3	145.907
	CRR073312	Silver flowering 1	251.510
	CRR073313	Silver flowering 2	291.061
	CRR073314	Silver flowering 3	289.998
	CRR073315	Gold flowering 1	5.603
	CRR073316	Gold flowering 2	4.784
	CRR073317	Gold flowering 3	5.307
	CRR073318	Tawny withering 1	33.932
	CRR073319	Tawny withering 2	37.096
	CRR073320	Tawny withering 3	23.142