Gene detail

Detail information of GWHGAAZE013300

Functional Annotation

Database	Orthologs	Annotation
Nr	CBI30244.3	unnamed protein product [Vitis vinifera]
Swissprot	tr\|Q9SJQ6\|ROS1_ARATH	Protein ROS1
trEMBL	tr\|K4D3F0\|K4D3F0_SOLLC	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc10g083630.1.1}
TAIR10	AT2G36490.1	demeter-like 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	100349984	100363502	-
GWHAAZE00000003	mRNA	100349984	100363502	-
GWHAAZE00000003	exon	100349984	100350105	-
GWHAAZE00000003	exon	100351708	100351746	-
GWHAAZE00000003	exon	100351823	100351937	-
GWHAAZE00000003	exon	100352023	100352088	-
GWHAAZE00000003	exon	100352652	100352791	-
GWHAAZE00000003	exon	100353141	100353198	-
GWHAAZE00000003	exon	100353286	100353322	-
GWHAAZE00000003	exon	100354199	100354660	-
GWHAAZE00000003	exon	100355942	100356024	-
GWHAAZE00000003	exon	100356114	100356150	-
GWHAAZE00000003	exon	100356451	100356542	-
GWHAAZE00000003	exon	100356951	100357035	-
GWHAAZE00000003	exon	100357216	100357295	-
GWHAAZE00000003	exon	100357610	100357818	-
GWHAAZE00000003	exon	100357980	100358821	-
GWHAAZE00000003	exon	100359144	100359234	-
GWHAAZE00000003	exon	100359838	100360245	-
GWHAAZE00000003	exon	100360838	100362433	-
GWHAAZE00000003	exon	100363112	100363502	-
GWHAAZE00000003	CDS	100363112	100363502	-
GWHAAZE00000003	CDS	100360838	100362433	-
GWHAAZE00000003	CDS	100359838	100360245	-
GWHAAZE00000003	CDS	100359144	100359234	-
GWHAAZE00000003	CDS	100357980	100358821	-
GWHAAZE00000003	CDS	100357610	100357818	-
GWHAAZE00000003	CDS	100357216	100357295	-
GWHAAZE00000003	CDS	100356951	100357035	-
GWHAAZE00000003	CDS	100356451	100356542	-
GWHAAZE00000003	CDS	100356114	100356150	-
GWHAAZE00000003	CDS	100355942	100356024	-
GWHAAZE00000003	CDS	100354199	100354660	-
GWHAAZE00000003	CDS	100353286	100353322	-
GWHAAZE00000003	CDS	100353141	100353198	-
GWHAAZE00000003	CDS	100352652	100352791	-
GWHAAZE00000003	CDS	100352023	100352088	-
GWHAAZE00000003	CDS	100351823	100351937	-
GWHAAZE00000003	CDS	100351708	100351746	-
GWHAAZE00000003	CDS	100349984	100350105	-

Transcript Sequence
>GWHTAAZE013314 ATGGATATTGAGGGTTCTTGGATTCCGGTAACCCCGGTGAAGCCCGGTGGAGCAGCACCGCAGCCGATCTGCACCGCAAAACAACCAAGTCAAGACAATTGGTTGAATTCAGAACAACAAGGATTTCAAATCGGCCAACCAAGTTGGGAAGAGTTTGACAGATTCTCGTCCGGGTTTCCTCAAGAGATTGGAACCCAACGAGCAGATGATGCGTGGTGTGCTTCGACCAGTGGGATCGATGTGAACAGGGGGTTCGACCTTTGGGATGAAGGAATGGGTTTTACAGATCTGCTGGAACTGGCTAATGTTGCCACTACTACTTCCACAGATCCAGCAGATGGAGCTACTCTAACCCAGGGGAACACCGATTTTGCACTTGGTTCGGCTCAGTATGAGTGTTCTTCTATTCCTTCACGATTGTCCTTCGATCTCAATTCGCCGCCTAAAACAACTGATGCAGTCTTGAACAAAACAATTTTCTCCAAATTTGCACCTGTAACACCAGATCAGTCCAAGAAGCAAGCATCTGATGTACAAAATCAAAGCATAGAGGAACGAACGAATCAAGCAAGAAATGAACAAGAGAATCAAGTTGTTACTAAAAGGGTTGAAGTGATTGAGATAAATGACGAAACAGAAGAGTCACAAGAAGATAAACATCAGTCGTGCACGCAATTACAGGAGAATCACAACCTTGACACGGGAACCGACAAAGGCACTGACTTGAACAAAACACCACAGCAGCAAAAACCAAGAAGAAGAAAGCACAGGCCCAAGGTTGTAATAGAAGGAGGCAAACCGGCAAGGCCTCGAAAACCCAGTACCCCAAAGCCCACGGGCCCCAAGGAAGCCACAACAACGGGTAAGAGAAAGTATGTCCGCAAGAAAGAGCTCGAGAAACCACCTGAGGCTACTCCTCCCTCCGAGGGGGTAAATAAGGGGCCCAGTCACACGAAAACAGTTGATGGTACCGAAAAATCATGTCGAAGATCCTTAAACTTTGATAATATGCAAAGCCAAGTGCAAGACGAAAGTTCCTCGTATAGACCGCCTTCAAATTTCGGTACAGAATCACGTGCGCAAAACTTTGGCGGCGCCAGGGCTCAATTCACAGACGCAAGGGTCGAGAAGACGCCAGTAGGGATCGCATATGACCTCTCGCAGTCGATGAGTAATATAGTGCAAAGTTACCTATCTATGCCGGATAGACAAGAGCCAAGCCCTTCGGAAAATGCAAGTACACGAGGAAAATGTCGAATAAATTTCTCGAACGACACTCATGATAGGGAATGTATGACAAATACAAATGGTGGTCCAACCCGTTTAACACCGAGCCCAAATGATTCCACCTGCAGCAGTAATGTATGTTTGACCAATGAGGAGCAAGCAAGGGGATTAAAGAGAGTAAATTCTAGCGCAACCCACGAAGCAATAAATGCATTTGGCTCACACTATAATTCTTTGCAAGCATTTGGAGCAACATTTCCTGTTAATGGGTACAGGTTAGCTGGTATGCATTTCCCAGCGATTCATAAGAAAAGGAGAACTGAGAAAGTGTACGGTTCAGCCACATCGAGCACATCTACAGTAACTGCCATACAAAATCCCGTAAGGCCAACAATGTTAGGTTCTTCATCAGAAATAAGCCAATATTCTTCTGCTCAGTTCAATGCTAGTAGTGGTGTCCCAGTGAAAACTGATGATAAAAACCACCCATTCCAGTGTATGTTAGCACTCGGCCAAGGAGATAAGTTGAAGAAGAAGAGGTCTAAAGGCCCCACTCGGGTACGTGATTACGCTTCGCTTATTGGAATGGTACCATTAGTGAATCAGCCTGTTGGAAGAGCAACAAATCAACCTTACACATGCATGGAAGCCCTAGCTGCTGATACGCGTGCAAGATTGGCAAGGAAGAAGCGGACTAAAAGAAATTCTCTTGTGAATTTGCCTCCCAGCATACAAAACTATCAATACTTCAAGTCAATGGGTCATCTTCCCAGTATAAAATGGAAAGGAATGTATTCAATCGATGCACTTGTTGAACAGTTTAGCCATCTAAATATCAATGCTGATCAATATCAGAACGCCCTTGTTCCATATAAGAATAGGAGGTACAATATGAGGTACCACGAACAAAATGCACTTGTTCTTTATCAACGAGATGGAACACTTGTGCCTTTTGAAGGCGCCTTTAATCCAATAAAGAAACGAAAACCACGCCCTAAAGTGAACCTTGACGATGAGACAACTAGAGTATGGAAACTGCTGTTGCAAGATATAAACAGTGTGGGTATAGATGGAACAGATGAAGAGAAGGCAAGATGGTGGGAAGAAGAAAGAAGAGTTTTTCGGGGAAGGGCAGACTCGTTTATTGCACGCATGCATCTCGTCCAAGGAGATAGACGATTCTCGAAGTGGAAGGGATCAGTTGTTGACTCTGTTGTTGGAGTTTTCCTCACTCAGAACGTCTCTGATCACCTATCTAGTTCTGCCTTTATGTCACTAGCAGCACGATATCCCCTCAAGTCAAAGAGGGGACAGGGCCGATCCGACAAAAAGGAAACAACTAGATTAGTCCGAGAACCAGAAGTTTGTGTATTGGAACCGGATGATACCATCGAATGGCATGAGGATAAGTCAAATCAGCCAGCCTGTGATCAAAGTTCTGTGACTATCCAGGATGTGGAATATAGTGAAGAAAAGGAAGTTATCAATGGCAATGAATCTGGAAGCAGCACTGATGGAGTTAGGTCAAATGATAATCTAAATTTGAAGTCGTTTGATTTTTCTACAACAGGAAAAGAATCAACCATGGGAGATCAAAGAGAACTGGACGATGTGATTTCGTCTCAGAACTCAGTAGTTTCCTCTCAAAACTCAGTGGACTCATCAATTGCTCAAACTGTCGAAAGAACAGGATCGTGTTCACAGAGCAACTCAGAAACAGGGCCTGTAGCTATCTCTAAACCTGAAAGATTTAGCGGCCCCACTTCTTTTCTGGAGCTATTAAGGAGGGCACATGGGGTTTTTAATCAGGAGAATGGAAATGAGCCATCTAGTTGGAACAACCCATTAGAAAGTAGGGTATCTGACCCACAGGAACAGGGTCCCAAAGCCTACTTAAGACCAGTGATCCCTACTACTAGTGATTGTCATCTGCATATGAACCCTAATTCAGTGGAAGTTGAGAGTTTTGATACGTTGGGAGAAGAAAGTAGATTTTCTGGCATGCCTAAGAAAAATGAAGAAAATTGCGCAAGTGAACAAAGTGGAGTATCAGCAGAATCTGCAAACCAAGCTGCTGGGAAAGTACCAAAATCTTCTGATGCAAAGAGTGGAAAAGTTGGAAAAGAGAAACAGAACGTGATTGACTGGGATGTCTTGAGAAAAGAAGCTCAGGCCAATGGTGTAAGAGAAAAAGAACCTAATACAATGGACTCAGTGGACTGGGAAGCAATCAGGTGTGCAGACGTCAACGAAATCGCTTACACCATCAGAGAAAGGGGAATGAATAATATGCTTGCAGAGAGAATTAAGGATTTCTTGAACCGGCTTGTTAGAGATCATGGAAGCATTGATCTTGAATGGTTGAGGGATGTTCCACCTGACAAGGCAAAAGAGTACCTGTTGAGCATCAGAGGTTTAGGTTTGAAAAGTGTCGAGTGTGTGCGGCTGTTGACACTTCACCATCTTGCTTTCCCTGTCGACACAAATGTAGGGCGTATAGCTGTAAGACTGGGATGGGTGCCGCTTCAACCGCTGCCTGAGTCACTTCAGTTGCATCTTCTAGAACTATATGAGTTACATTACCAGATGATTACTTTTGGAAAGGTTTTCTGTACAAAAAGCAAACCAAATTGCAATGCATGTCCAATGAGGGGAGAGTGCAGGCACTTTGCAAGTGCTTTTGCAAGTGCAAGGCTCGCCTTACCATCACCAGAAGATAAAAGTATAGTGGCTGCAACAGAAAATATGGCATCCAATCAAGCCCATATGGGTCCCATCAATAGATTGCAGCTACCTCCACCTCAGCCTAATCAACAACTAGTACAGTCTCAGGCCAGCAACTGTGATCCTATAATTGAAGAACCAGCATCACCGGAACCAATAATTGAAGTGCCACCATCCCCTGAGCCAGAACAGACAGAAATAACGGAATTTGACATTGAGGACACTTGCGAAGATCCTGATGAAATTCCTGCTATCAAACTCAACATTGAAGAGTTCAGTCAGAATTTGCAGAATTACATGCAACAGAATATGGAACTACAGGAGGGTGATGTGTCAAAGGCATTGGTAGCTTTAACTTCAGAGGCTGCTTCAATTCCTACGCCTAAACTTAAGAATGTGAGCAGACTAAGAACTGAGCACCAAGTCTATGAGCTTCCAGATTCTCATCCTCTGTTGGAAGGGCTGGACAGGAGAGAACCCGATGATCCATGCTCATACCTTCTCGCAATTTGGACACCTGGTGAAACTCCAGACTCAGTTCAGCCACCGGAAGGGGGGTGTAGCGCCCAAGAATCTGGCAGACTTTGCGATGAGAAAACATGCTTTTCATGCAATAATATCCGAGAAACAAACTTACAAACAGTTCGAGGGACACTTTTGATACCATGTCGAACAGCTATGAGAGGGAGTTTTCCACTCAATGGCACGTACTTCCAAGTTAACGAGGTGTTTGCAGATCATGACTCTAGTCTTAACCCAATTGATGTTCCAAGGGCTTGGATATGGAATTTGCCAAGAAGAACAGTGTACTTTGGAACCTCCATACCAACGATATTTAAAGGTCTATCCACAGAAGGGATTCAATTTTGCTTCTGGAGAGGGTTTGTTTGTGTGAGAGGATTTGACCAAAAGACACGAGCACCTCGTCCACTCATGGCTAGACTGCACTTCCCAGCTAGCAAGTTGGTTAAGACAAAAGGGAAACCGAATGAAGAAACTTGA

Network for GWHGAAZE013300

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF15629.7	Perm-CXXC	1500	1531	8.40E-13
PF15628.7	RRM_DME	1534	1634	1.40E-54

Protein Sequence

>GWHPAAZE013307
MDIEGSWIPVTPVKPGGAAPQPICTAKQPSQDNWLNSEQQGFQIGQPSWEEFDRFSSGFPQEIGTQRADDAWCASTSGIDVNRGFDLWDEGMGFTDLLELANVATTTSTDPADGATLTQGNTDFALGSAQYECSSIPSRLSFDLNSPPKTTDAVLNKTIFSKFAPVTPDQSKKQASDVQNQSIEERTNQARNEQENQVVTKRVEVIEINDETEESQEDKHQSCTQLQENHNLDTGTDKGTDLNKTPQQQKPRRRKHRPKVVIEGGKPARPRKPSTPKPTGPKEATTTGKRKYVRKKELEKPPEATPPSEGVNKGPSHTKTVDGTEKSCRRSLNFDNMQSQVQDESSSYRPPSNFGTESRAQNFGGARAQFTDARVEKTPVGIAYDLSQSMSNIVQSYLSMPDRQEPSPSENASTRGKCRINFSNDTHDRECMTNTNGGPTRLTPSPNDSTCSSNVCLTNEEQARGLKRVNSSATHEAINAFGSHYNSLQAFGATFPVNGYRLAGMHFPAIHKKRRTEKVYGSATSSTSTVTAIQNPVRPTMLGSSSEISQYSSAQFNASSGVPVKTDDKNHPFQCMLALGQGDKLKKKRSKGPTRVRDYASLIGMVPLVNQPVGRATNQPYTCMEALAADTRARLARKKRTKRNSLVNLPPSIQNYQYFKSMGHLPSIKWKGMYSIDALVEQFSHLNINADQYQNALVPYKNRRYNMRYHEQNALVLYQRDGTLVPFEGAFNPIKKRKPRPKVNLDDETTRVWKLLLQDINSVGIDGTDEEKARWWEEERRVFRGRADSFIARMHLVQGDRRFSKWKGSVVDSVVGVFLTQNVSDHLSSSAFMSLAARYPLKSKRGQGRSDKKETTRLVREPEVCVLEPDDTIEWHEDKSNQPACDQSSVTIQDVEYSEEKEVINGNESGSSTDGVRSNDNLNLKSFDFSTTGKESTMGDQRELDDVISSQNSVVSSQNSVDSSIAQTVERTGSCSQSNSETGPVAISKPERFSGPTSFLELLRRAHGVFNQENGNEPSSWNNPLESRVSDPQEQGPKAYLRPVIPTTSDCHLHMNPNSVEVESFDTLGEESRFSGMPKKNEENCASEQSGVSAESANQAAGKVPKSSDAKSGKVGKEKQNVIDWDVLRKEAQANGVREKEPNTMDSVDWEAIRCADVNEIAYTIRERGMNNMLAERIKDFLNRLVRDHGSIDLEWLRDVPPDKAKEYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFASARLALPSPEDKSIVAATENMASNQAHMGPINRLQLPPPQPNQQLVQSQASNCDPIIEEPASPEPIIEVPPSPEPEQTEITEFDIEDTCEDPDEIPAIKLNIEEFSQNLQNYMQQNMELQEGDVSKALVALTSEAASIPTPKLKNVSRLRTEHQVYELPDSHPLLEGLDRREPDDPCSYLLAIWTPGETPDSVQPPEGGCSAQESGRLCDEKTCFSCNNIRETNLQTVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLNPIDVPRAWIWNLPRRTVYFGTSIPTIFKGLSTEGIQFCFWRGFVCVRGFDQKTRAPRPLMARLHFPASKLVKTKGKPNEET

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006281	biological_process	DNA repair
GO:0006284	biological_process	base-excision repair
GO:0003824	molecular_function	catalytic activity
GO:0051539	molecular_function	4 iron, 4 sulfur cluster binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	56.595
	SRR3591706	second leaf	41.545
	SRR3591707	mature leaf	20.159
	SRR3591708	Shoot apex	48.032
	SRR3591709	Stem	56.134
	SRR3591710	White floral bud	64.477
	SRR3591711	White flower	62.017
	SRR3591712	Green floral bud	53.827
	SRR3591713	Yellow flower	41.666
SRP173429	SRR8316895	Juvenile bud stage	35.343
	SRR8316896	Juvenile bud stage	47.788
	SRR8316897	Juvenile bud stage	20.828
	SRR8316894	Third green stage	25.392
	SRR8316900	Third green stage	48.492
	SRR8316901	Third green stage	48.151
	SRR8316898	Complete white stage	14.000
	SRR8316899	Complete white stage	47.900
	SRR8316903	Complete white stage	43.175
	SRR8316902	Silver flowering stage	17.327
	SRR8316904	Silver flowering stage	37.843
	SRR8316905	Silver flowering stage	17.368
	SRR8316906	Gold flowering stage	48.697
	SRR8316907	Gold flowering stage	42.545
	SRR8316908	Gold flowering stage	45.525
SRP132670	SRR6706286	Control	47.540
	SRR6706287	Light intensity 50%	49.249
	SRR6706288	Light intensity 20%	48.337
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	24.326
	CNS0095593	Slightly white alabastrum(diploid) 2	20.986
	CNS0095594	Slightly white alabastrum(diploid) 3	22.976
	CNS0095595	Whole white alabastrum(diploid) 2	19.585
	CNS0095596	Whole white alabastrum(diploid) 3	16.839
	CNS0095597	Whole white alabastrum(diploid) 4	18.556
	CNS0095598	Silvery flower (diploied) 1	22.170
	CNS0095599	Silvery flower (diploied) 2	13.487
	CNS0095600	Silvery flower (diploied) 3	46.177
	CNS0095601	Golden flower (diploid) 1	15.521
	CNS0095602	Golden flower (diploid) 2	39.604
	CNS0095603	Golden flower (diploid) 3	37.440
	CNS0095604	Slightly white alabastrum(tetraploid) 1	32.631
	CNS0095605	Slightly white alabastrum(tetraploid) 2	24.841
	CNS0095606	Slightly white alabastrum(tetraploid) 3	65.226
	CNS0095607	Whole white alabastrum(tetraploid) 1	20.394
	CNS0095608	Whole white alabastrum(tetraploid) 2	16.321
	CNS0095609	Whole white alabastrum(tetraploid) 3	42.242
	CNS0095610	Silvery flower (tetraploid) 1	44.449
	CNS0095611	Silvery flower (tetraploid) 2	35.834
	CNS0095612	Silvery flower (tetraploid) 3	52.102
	CNS0095613	Golden flower (tetraploid) 1	22.841
	CNS0095614	Golden flower (tetraploid) 2	30.649
	CNS0095615	Golden flower (tetraploid) 3	51.706
CRA001975	CRR073297	Stem 1	65.537
	CRR073298	Stem 2	55.812
	CRR073299	Stem 3	36.831
	CRR073300	Leaf 1	55.830
	CRR073301	Leaf 2	47.767
	CRR073302	Leaf 3	29.622
	CRR073303	Juvenile bud 1	25.380
	CRR073304	Juvenile bud 2	17.206
	CRR073305	Juvenile bud 3	38.832
	CRR073306	Third green 1	12.287
	CRR073307	Third green 2	9.939
	CRR073308	Third green 3	15.210
	CRR073309	Second white 1	8.000
	CRR073310	Second white 2	16.668
	CRR073311	Second white 3	17.316
	CRR073312	Silver flowering 1	12.241
	CRR073313	Silver flowering 2	12.399
	CRR073314	Silver flowering 3	14.813
	CRR073315	Gold flowering 1	5.437
	CRR073316	Gold flowering 2	15.431
	CRR073317	Gold flowering 3	4.521
	CRR073318	Tawny withering 1	27.143
	CRR073319	Tawny withering 2	24.580
	CRR073320	Tawny withering 3	24.128