Gene detail

Detail information of GWHGAAZE013313

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002277826.1	0	PREDICTED: uncharacterized protein LOC100264768 isoform X1 [Vitis vinifera]
Swissprot	tr\|Q9LJG8\|ASIL2_ARATH	5E-17	Trihelix transcription factor ASIL2 {ECO:0000305}
trEMBL	tr\|F6HKF7\|F6HKF7_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB55379.1}
TAIR10	AT3G10030.1	2E-157	aspartate/glutamate/uridylate kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	100516039	100523941	-
GWHAAZE00000003	mRNA	100516039	100523941	-
GWHAAZE00000003	exon	100516039	100516136	-
GWHAAZE00000003	exon	100516938	100517108	-
GWHAAZE00000003	exon	100518283	100518518	-
GWHAAZE00000003	exon	100519825	100519916	-
GWHAAZE00000003	exon	100520357	100520410	-
GWHAAZE00000003	exon	100520599	100520746	-
GWHAAZE00000003	exon	100523472	100523941	-
GWHAAZE00000003	CDS	100523472	100523941	-
GWHAAZE00000003	CDS	100520599	100520746	-
GWHAAZE00000003	CDS	100520357	100520410	-
GWHAAZE00000003	CDS	100519825	100519916	-
GWHAAZE00000003	CDS	100518283	100518518	-
GWHAAZE00000003	CDS	100516938	100517108	-
GWHAAZE00000003	CDS	100516039	100516136	-

Transcript Sequence
>GWHTAAZE013327 ATGCTTCCACGGAGAAGCGTAACGATCGAGAAGAGCTTAGCGATGGAGGAACACCTTACAGCTACAAGAAGCCAAGGCTTCCCGGTGGCGGTGGGGAGTATAGAAAAGATAGGGAGGAGTGGAGCGTCACCATCAGCGTGCCTTCTGGATGCCTACTTGGATAAGTTTTCACAGCTTAATAGGGGGAATTTGAGAGGAAGAGATTGGGAGGAGGTTGCTGTAATTGTGAGTGAGAGGTGCGATAAGCAATCGAAGAGCGTGGAGCAGTGCAAGAACAAGGTGGATAATTTGAAGAAGAGGTATAAATTAGAGAGGCATAGGATGAACAATGGTGGGGTTTCGGCTAGTCACTGGCCCTGGTTCAAGAAGATGGAGCAGATTGTTGGTAATTCGTTGCCATCGTTGAAAGCTGTTTCTGAAGAGGATAAATCTGTTGGTGGATCTGCTAGCTCACTTCGACAATCCAAAAGATATGGAACAGCAACTTCCAACCCCAGTGGTCAGATAAATAATGTAAAGTCAAAATCAACGACAAACCCTAGATGGAGGAGAGTGGTTTTTAAAATTAGTGGTGCTGCACTGGCAGGTTCTGGTTCTTCTGACAATATTGACCCGAAGGTGGCAATGCTGATTGCTAGAGAAGTGTCGGTTGCTTGCCGTGCTGGTGTTGAGGTAGCGATAGTCGTTGGTGGCCGTAATTTCTTTTGTGGAGACACTTGGGTAACAGCAACAGGTTTAGATAGGTGTACTGCATATCAGATTGGTATGATGGCAACTGTGATGAATTCAATACTACTACAGTCAGCTTTAGAAAAGATGGGTGTACAAGCACGCATTCAAACTGCATTTTCTATGCCCGAGGTTGCTGAACCATACAGCCGGCAACGGGCTATTCGGCATCTTGAAAAAGGGCGGGTGGTTATATTTGGTGGCGTTGGTGCTGGCACTGGGAATCCCCTTTTCTCCACTGACACCGCTGCTGCTCTTAGAGCTTCAGAGATTCATGCAGATGCAGTACTTAAAGGTACCAATGTAGACAGTGCATATGATTGTGACTCCAGAAATAACAATAATGTGTTTGAGCACATTTCCTTCCGGGATTTGGCTTCGAGAGGCACGTCTCCAATGGATATGATGGCCGTGACTTTCTGTGAGGAGAATGGGATTCCAGTTGTGATATTCAATCTACATGAGCCCGGAAACATATCAAGAGCGTTATGTGGAGAACAAGTTGGCACACTAGTTGATCAAACCGGTAGGGTTAGCTAA

Network for GWHGAAZE013313

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13837.7	Myb_DNA-bind_4	47	127	3.30E-16
PF00696.29	AA_kinase	184	395	1.90E-24

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	Trihelix

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006221	biological_process	pyrimidine nucleotide biosynthetic process
GO:0005737	cellular_component	cytoplasm
GO:0033862	molecular_function	UMP kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	22.794
	SRR3591706	second leaf	11.583
	SRR3591707	mature leaf	11.912
	SRR3591708	Shoot apex	18.653
	SRR3591709	Stem	21.071
	SRR3591710	White floral bud	28.723
	SRR3591711	White flower	24.036
	SRR3591712	Green floral bud	19.161
	SRR3591713	Yellow flower	18.466
SRP173429	SRR8316895	Juvenile bud stage	11.946
	SRR8316896	Juvenile bud stage	19.375
	SRR8316897	Juvenile bud stage	9.083
	SRR8316894	Third green stage	7.092
	SRR8316900	Third green stage	19.954
	SRR8316901	Third green stage	21.835
	SRR8316898	Complete white stage	10.571
	SRR8316899	Complete white stage	39.241
	SRR8316903	Complete white stage	19.998
	SRR8316902	Silver flowering stage	8.913
	SRR8316904	Silver flowering stage	12.502
	SRR8316905	Silver flowering stage	6.038
	SRR8316906	Gold flowering stage	19.856
	SRR8316907	Gold flowering stage	20.204
	SRR8316908	Gold flowering stage	20.175
SRP132670	SRR6706286	Control	24.251
	SRR6706287	Light intensity 50%	23.453
	SRR6706288	Light intensity 20%	23.456
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	13.755
	CNS0095593	Slightly white alabastrum(diploid) 2	14.209
	CNS0095594	Slightly white alabastrum(diploid) 3	14.045
	CNS0095595	Whole white alabastrum(diploid) 2	14.038
	CNS0095596	Whole white alabastrum(diploid) 3	13.078
	CNS0095597	Whole white alabastrum(diploid) 4	16.110
	CNS0095598	Silvery flower (diploied) 1	20.144
	CNS0095599	Silvery flower (diploied) 2	18.521
	CNS0095600	Silvery flower (diploied) 3	23.224
	CNS0095601	Golden flower (diploid) 1	26.608
	CNS0095602	Golden flower (diploid) 2	24.729
	CNS0095603	Golden flower (diploid) 3	23.807
	CNS0095604	Slightly white alabastrum(tetraploid) 1	18.527
	CNS0095605	Slightly white alabastrum(tetraploid) 2	17.329
	CNS0095606	Slightly white alabastrum(tetraploid) 3	33.400
	CNS0095607	Whole white alabastrum(tetraploid) 1	17.537
	CNS0095608	Whole white alabastrum(tetraploid) 2	13.621
	CNS0095609	Whole white alabastrum(tetraploid) 3	22.310
	CNS0095610	Silvery flower (tetraploid) 1	28.358
	CNS0095611	Silvery flower (tetraploid) 2	24.602
	CNS0095612	Silvery flower (tetraploid) 3	26.249
	CNS0095613	Golden flower (tetraploid) 1	22.498
	CNS0095614	Golden flower (tetraploid) 2	29.097
	CNS0095615	Golden flower (tetraploid) 3	20.208
CRA001975	CRR073297	Stem 1	19.267
	CRR073298	Stem 2	19.713
	CRR073299	Stem 3	16.972
	CRR073300	Leaf 1	30.502
	CRR073301	Leaf 2	26.214
	CRR073302	Leaf 3	18.951
	CRR073303	Juvenile bud 1	23.764
	CRR073304	Juvenile bud 2	15.293
	CRR073305	Juvenile bud 3	20.723
	CRR073306	Third green 1	10.463
	CRR073307	Third green 2	9.254
	CRR073308	Third green 3	11.426
	CRR073309	Second white 1	8.340
	CRR073310	Second white 2	10.221
	CRR073311	Second white 3	9.804
	CRR073312	Silver flowering 1	7.086
	CRR073313	Silver flowering 2	4.357
	CRR073314	Silver flowering 3	10.321
	CRR073315	Gold flowering 1	7.109
	CRR073316	Gold flowering 2	9.174
	CRR073317	Gold flowering 3	5.899
	CRR073318	Tawny withering 1	11.395
	CRR073319	Tawny withering 2	12.120
	CRR073320	Tawny withering 3	16.086