Gene detail

Detail information of GWHGAAZE013323

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007202377.1	1.5493E-179	hypothetical protein PRUPE_ppa009334mg [Prunus persica]
Swissprot	tr\|Q9LF92\|P2A15_ARATH	2E-156	F-box protein PP2-A15
trEMBL	tr\|M5VRF6\|M5VRF6_PRUPE	6E-180	Uncharacterized protein {ECO:0000313\|EMBL:EMJ03576.1}
TAIR10	AT3G53000.1	8E-125	phloem protein 2-A15

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	100741470	100745511	-
GWHAAZE00000003	mRNA	100741470	100745511	-
GWHAAZE00000003	exon	100745218	100745511	-
GWHAAZE00000003	exon	100744028	100744146	-
GWHAAZE00000003	exon	100741470	100741932	-
GWHAAZE00000003	CDS	100745218	100745511	-
GWHAAZE00000003	CDS	100744028	100744146	-
GWHAAZE00000003	CDS	100741470	100741932	-

Transcript Sequence
>GWHTAAZE013337 ATGGGGGCCTCGATTTCGAACCTCGAGGAAGAGTCGAAACCGGGGCTGGGAGACATACCGGAGAGCTGCGTGGCCTGCGTATTACTATACCTCACCCCTCCCGAAATTTGCAACCTCGCCCGCCTCAACCGTGCCTTTCGAGGCGCCGCCTCTTCCGACTCCGTCTGGGAATCCAAGCTCCCTCATAACTACAACGATATCCTCGCCGTTTTACCTCCCCACCACCGGGATCTTTGCAAAAAGGACATTTTTGCCCTCCTCTCTCGCCCGGTCCCTTTTGATGACGGAAACAAGGAAATATGGTTAGATAGGGTTACTGGAAGGGTTTGCATGTCAATCTCTTCAAAGGCAATGGCAATAACTGGGATTGAAGATCGTAGATACTGGAATTGGATGCCTACTGAAGAATCTAGGTTCCACACTGTGGCCTACTTGCAGCAAATATGGTGGTTTGAAGTTGATGGGGTAGTAAAGTTCCCTTTACCCGCTGATATATATACTCTCTCATTCCGAATTCACCTCGGTAGATTTTCCAAAAGGCTCGGTCGACGTGTTTGCAATTTTGAGCACACCCATGGTTGGGATATAAAGCCAGTGCGGTTTGAGTTATCTACTTCAGACGGTCAACAAGCATCAACTTATTGCTGTTTAGAGGAGACCGACCAAGAAGATTCAAATGGAAACCACAACCGTGGTTGCTGGGTTGAGTATAAGGTTGGTGAATTCATAGTTGGCGAGTCTGATCCTGCAACTGAAGTTAGATTCTCGATGAAACAGATTGATTGCACGCATTCCAAAGGTGGGCTTTGTGTAGATAATGTATCTATTATCCCCAGTGATTTGAAGGTACGAAGAAGAAGAGGGGTTTTGAAGTAG

Network for GWHGAAZE013323

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14299.7	PP2	109	278	8.90E-41

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	15.094
	SRR3591706	second leaf	12.391
	SRR3591707	mature leaf	10.778
	SRR3591708	Shoot apex	18.870
	SRR3591709	Stem	17.764
	SRR3591710	White floral bud	15.191
	SRR3591711	White flower	16.793
	SRR3591712	Green floral bud	17.556
	SRR3591713	Yellow flower	13.186
SRP173429	SRR8316895	Juvenile bud stage	14.879
	SRR8316896	Juvenile bud stage	22.698
	SRR8316897	Juvenile bud stage	6.959
	SRR8316894	Third green stage	6.082
	SRR8316900	Third green stage	18.676
	SRR8316901	Third green stage	21.534
	SRR8316898	Complete white stage	7.344
	SRR8316899	Complete white stage	26.630
	SRR8316903	Complete white stage	15.233
	SRR8316902	Silver flowering stage	10.016
	SRR8316904	Silver flowering stage	8.892
	SRR8316905	Silver flowering stage	4.968
	SRR8316906	Gold flowering stage	16.643
	SRR8316907	Gold flowering stage	17.079
	SRR8316908	Gold flowering stage	18.568
SRP132670	SRR6706286	Control	14.649
	SRR6706287	Light intensity 50%	16.362
	SRR6706288	Light intensity 20%	15.554
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	15.750
	CNS0095593	Slightly white alabastrum(diploid) 2	12.908
	CNS0095594	Slightly white alabastrum(diploid) 3	15.475
	CNS0095595	Whole white alabastrum(diploid) 2	19.659
	CNS0095596	Whole white alabastrum(diploid) 3	16.138
	CNS0095597	Whole white alabastrum(diploid) 4	15.949
	CNS0095598	Silvery flower (diploied) 1	23.011
	CNS0095599	Silvery flower (diploied) 2	19.473
	CNS0095600	Silvery flower (diploied) 3	24.499
	CNS0095601	Golden flower (diploid) 1	22.093
	CNS0095602	Golden flower (diploid) 2	25.615
	CNS0095603	Golden flower (diploid) 3	27.560
	CNS0095604	Slightly white alabastrum(tetraploid) 1	17.408
	CNS0095605	Slightly white alabastrum(tetraploid) 2	16.836
	CNS0095606	Slightly white alabastrum(tetraploid) 3	23.854
	CNS0095607	Whole white alabastrum(tetraploid) 1	18.939
	CNS0095608	Whole white alabastrum(tetraploid) 2	16.823
	CNS0095609	Whole white alabastrum(tetraploid) 3	19.883
	CNS0095610	Silvery flower (tetraploid) 1	20.709
	CNS0095611	Silvery flower (tetraploid) 2	24.702
	CNS0095612	Silvery flower (tetraploid) 3	21.814
	CNS0095613	Golden flower (tetraploid) 1	13.608
	CNS0095614	Golden flower (tetraploid) 2	19.776
	CNS0095615	Golden flower (tetraploid) 3	24.050
CRA001975	CRR073297	Stem 1	29.871
	CRR073298	Stem 2	27.154
	CRR073299	Stem 3	31.744
	CRR073300	Leaf 1	23.801
	CRR073301	Leaf 2	21.420
	CRR073302	Leaf 3	22.629
	CRR073303	Juvenile bud 1	27.185
	CRR073304	Juvenile bud 2	21.108
	CRR073305	Juvenile bud 3	32.561
	CRR073306	Third green 1	16.638
	CRR073307	Third green 2	16.329
	CRR073308	Third green 3	17.085
	CRR073309	Second white 1	16.030
	CRR073310	Second white 2	15.654
	CRR073311	Second white 3	12.126
	CRR073312	Silver flowering 1	14.548
	CRR073313	Silver flowering 2	18.836
	CRR073314	Silver flowering 3	8.898
	CRR073315	Gold flowering 1	16.488
	CRR073316	Gold flowering 2	14.035
	CRR073317	Gold flowering 3	18.729
	CRR073318	Tawny withering 1	22.492
	CRR073319	Tawny withering 2	20.882
	CRR073320	Tawny withering 3	22.553