Detail information of GWHGAAZE013336


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_003633259.11.1559E-133PREDICTED: uncharacterized protein LOC100243829 isoform X1 [Vitis vinifera]
Swissprottr|F4JKK0|SUD1_ARATH0.000001Probable E3 ubiquitin ligase SUD1
trEMBLtr|F6H565|F6H565_VITVI4E-134Putative uncharacterized protein {ECO:0000313|EMBL:CCB47433.1}
TAIR10AT5G60580.34E-47RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene100995083100998126-
GWHAAZE00000003mRNA100995083100998126-
GWHAAZE00000003exon100995083100995420-
GWHAAZE00000003exon100996352100996529-
GWHAAZE00000003exon100996620100997063-
GWHAAZE00000003exon100998043100998126-
GWHAAZE00000003CDS100998043100998126-
GWHAAZE00000003CDS100996620100997063-
GWHAAZE00000003CDS100996352100996529-
GWHAAZE00000003CDS100995083100995420-
Transcript Sequence

Network for GWHGAAZE013336

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0197


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF12906.8RINGv2512989.40E-12
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0008270molecular_functionzinc ion binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf27.010
SRR3591706second leaf10.049
SRR3591707mature leaf14.361
SRR3591708Shoot apex17.566
SRR3591709Stem35.894
SRR3591710White floral bud25.426
SRR3591711White flower34.566
SRR3591712Green floral bud20.186
SRR3591713Yellow flower21.631
SRP173429 SRR8316895Juvenile bud stage 7.481
SRR8316896Juvenile bud stage 9.883
SRR8316897Juvenile bud stage 5.081
SRR8316894Third green stage 4.365
SRR8316900Third green stage 12.293
SRR8316901Third green stage 11.027
SRR8316898Complete white stage 5.421
SRR8316899Complete white stage 15.929
SRR8316903Complete white stage 11.515
SRR8316902Silver flowering stage8.215
SRR8316904Silver flowering stage11.502
SRR8316905Silver flowering stage4.009
SRR8316906Gold flowering stage 15.656
SRR8316907Gold flowering stage 16.320
SRR8316908Gold flowering stage 14.445
SRP132670SRR6706286Control12.335
SRR6706287Light intensity 50%10.893
SRR6706288Light intensity 20%12.939
CNP0000432CNS0095592Slightly white alabastrum(diploid) 17.417
CNS0095593Slightly white alabastrum(diploid) 28.836
CNS0095594Slightly white alabastrum(diploid) 36.786
CNS0095595Whole white alabastrum(diploid) 26.300
CNS0095596Whole white alabastrum(diploid) 33.302
CNS0095597Whole white alabastrum(diploid) 46.157
CNS0095598Silvery flower (diploied) 110.200
CNS0095599Silvery flower (diploied) 26.720
CNS0095600Silvery flower (diploied) 314.571
CNS0095601Golden flower (diploid) 18.386
CNS0095602Golden flower (diploid) 213.709
CNS0095603Golden flower (diploid) 312.773
CNS0095604Slightly white alabastrum(tetraploid) 18.363
CNS0095605Slightly white alabastrum(tetraploid) 24.833
CNS0095606Slightly white alabastrum(tetraploid) 311.512
CNS0095607Whole white alabastrum(tetraploid) 14.961
CNS0095608Whole white alabastrum(tetraploid) 23.227
CNS0095609Whole white alabastrum(tetraploid) 37.423
CNS0095610Silvery flower (tetraploid) 115.683
CNS0095611Silvery flower (tetraploid) 214.589
CNS0095612Silvery flower (tetraploid) 314.335
CNS0095613Golden flower (tetraploid) 19.894
CNS0095614Golden flower (tetraploid) 213.131
CNS0095615Golden flower (tetraploid) 314.793
CRA001975CRR073297Stem 111.839
CRR073298Stem 210.877
CRR073299Stem 310.777
CRR073300Leaf 111.427
CRR073301Leaf 210.751
CRR073302Leaf 38.047
CRR073303Juvenile bud 19.656
CRR073304Juvenile bud 25.908
CRR073305Juvenile bud 313.005
CRR073306Third green 17.189
CRR073307Third green 29.561
CRR073308Third green 39.632
CRR073309Second white 18.863
CRR073310Second white 212.002
CRR073311Second white 39.827
CRR073312Silver flowering 110.412
CRR073313Silver flowering 28.258
CRR073314Silver flowering 39.581
CRR073315Gold flowering 13.984
CRR073316Gold flowering 25.811
CRR073317Gold flowering 35.411
CRR073318Tawny withering 117.769
CRR073319Tawny withering 218.234
CRR073320Tawny withering 318.800