Gene detail

Detail information of GWHGAAZE013339

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006492243.1	4.19769E-70	PREDICTED: serine/threonine-protein phosphatase 5-like isoform X1 [Citrus sinensis]
Swissprot	tr\|Q84XU2\|PPP5_ARATH	3E-63	Serine/threonine-protein phosphatase 5
trEMBL	tr\|A0A067ETU4\|A0A067ETU4_CITSI	2E-70	Uncharacterized protein {ECO:0000313\|EMBL:KDO58589.1}
TAIR10	AT2G42810.2	8E-36	protein phosphatase 5.2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	101053484	101056755	+
GWHAAZE00000003	mRNA	101053484	101056755	+
GWHAAZE00000003	exon	101053484	101053553	+
GWHAAZE00000003	exon	101053638	101053780	+
GWHAAZE00000003	exon	101054527	101054677	+
GWHAAZE00000003	exon	101055148	101055193	+
GWHAAZE00000003	exon	101055294	101055488	+
GWHAAZE00000003	exon	101056429	101056539	+
GWHAAZE00000003	exon	101056686	101056755	+
GWHAAZE00000003	CDS	101053484	101053553	+
GWHAAZE00000003	CDS	101053638	101053780	+
GWHAAZE00000003	CDS	101054527	101054677	+
GWHAAZE00000003	CDS	101055148	101055193	+
GWHAAZE00000003	CDS	101055294	101055488	+
GWHAAZE00000003	CDS	101056429	101056539	+
GWHAAZE00000003	CDS	101056686	101056755	+

Transcript Sequence
>GWHTAAZE013353 ATGAATATTATAAATTCCAACATTTCGCAAGCCGAAGATATTAAAATCTTAGCTAATGAAGCATTCAAAGCCCAAAAATGTTCTCAAGCTATTGATTTGTACACACAAGCAATTGAACTATATAATGAAAATGTGCTGTGCTGGGCGAATCGTTCTTTCACCCATACCAAGCTGGAGGAGTATGGCAGTGCCGTTGAGGATGCATCCAGGGCTGTCAAGAAAATCCATCCAAATGATCCTGATGCTGCTAAGAAATTAAAGGAATGTGAGAAAGCTGTCTTGAAGCTCAGATTCGAAGAAGCAATTGCTTTACCTGATTCTCAGAGACATTCAATAACTGATTCTATCAAATTTTGTTCCACAGGGGCATATAAATTAGTCTTGCCCGGCCTGCAGGCGGTGTTTAACGTGGGTGGGCCCAGGGTCATCATACGTTCCACCCCAAGCGGCTGTTGTAGCCGTGGCAGTAGTACTACTGGCAATACTGGTGGTGCTGGGGACAAAATCAGTCACACTGGTTGTGACAGCGGCAATGGCAACATTATTGGTGGTTATGAGGACAAGTTGGAGTGGCATCTTTACACAGAGTCGAACAGAAAACCTAGTTGTGGAGCCACACAGTACACCGGTGCCAGAATAGAGGGAGATGTTGTAACTCTGGCATTTGTTAAAAAAATGATGGACGACTTCAAGAACCAGAAGTCGTTACACAAACGATACGCGTACCAGATTGTCTTGCAAACGAAAGAAATGCTGCAAGCCTTGCCGTCTCTTGTGTTGATATAA

Network for GWHGAAZE013339

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08321.13	PPP5	206	259	1.20E-16

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K04460	PPP5C	MAPK signaling pathway	map04010

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.277
	SRR3591706	second leaf	1.143
	SRR3591707	mature leaf	0.421
	SRR3591708	Shoot apex	1.588
	SRR3591709	Stem	0.758
	SRR3591710	White floral bud	0.400
	SRR3591711	White flower	1.041
	SRR3591712	Green floral bud	1.357
	SRR3591713	Yellow flower	0.020
SRP173429	SRR8316895	Juvenile bud stage	5.850
	SRR8316896	Juvenile bud stage	9.168
	SRR8316897	Juvenile bud stage	3.923
	SRR8316894	Third green stage	3.212
	SRR8316900	Third green stage	6.907
	SRR8316901	Third green stage	7.954
	SRR8316898	Complete white stage	1.812
	SRR8316899	Complete white stage	7.329
	SRR8316903	Complete white stage	3.495
	SRR8316902	Silver flowering stage	0.843
	SRR8316904	Silver flowering stage	1.676
	SRR8316905	Silver flowering stage	0.923
	SRR8316906	Gold flowering stage	3.348
	SRR8316907	Gold flowering stage	3.258
	SRR8316908	Gold flowering stage	2.764
SRP132670	SRR6706286	Control	5.423
	SRR6706287	Light intensity 50%	6.513
	SRR6706288	Light intensity 20%	7.638
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	11.395
	CNS0095593	Slightly white alabastrum(diploid) 2	11.003
	CNS0095594	Slightly white alabastrum(diploid) 3	10.222
	CNS0095595	Whole white alabastrum(diploid) 2	9.227
	CNS0095596	Whole white alabastrum(diploid) 3	9.970
	CNS0095597	Whole white alabastrum(diploid) 4	7.697
	CNS0095598	Silvery flower (diploied) 1	8.047
	CNS0095599	Silvery flower (diploied) 2	4.859
	CNS0095600	Silvery flower (diploied) 3	5.015
	CNS0095601	Golden flower (diploid) 1	4.232
	CNS0095602	Golden flower (diploid) 2	5.490
	CNS0095603	Golden flower (diploid) 3	5.953
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.550
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.495
	CNS0095606	Slightly white alabastrum(tetraploid) 3	5.749
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.858
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.562
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.952
	CNS0095610	Silvery flower (tetraploid) 1	2.997
	CNS0095611	Silvery flower (tetraploid) 2	2.449
	CNS0095612	Silvery flower (tetraploid) 3	1.301
	CNS0095613	Golden flower (tetraploid) 1	2.478
	CNS0095614	Golden flower (tetraploid) 2	2.315
	CNS0095615	Golden flower (tetraploid) 3	1.928
CRA001975	CRR073297	Stem 1	8.348
	CRR073298	Stem 2	5.408
	CRR073299	Stem 3	2.588
	CRR073300	Leaf 1	8.057
	CRR073301	Leaf 2	5.746
	CRR073302	Leaf 3	2.006
	CRR073303	Juvenile bud 1	1.614
	CRR073304	Juvenile bud 2	0.975
	CRR073305	Juvenile bud 3	0.634
	CRR073306	Third green 1	0.522
	CRR073307	Third green 2	0.297
	CRR073308	Third green 3	0.217
	CRR073309	Second white 1	0.356
	CRR073310	Second white 2	0.392
	CRR073311	Second white 3	0.068
	CRR073312	Silver flowering 1	0.034
	CRR073313	Silver flowering 2	0.380
	CRR073314	Silver flowering 3	0.511
	CRR073315	Gold flowering 1	1.143
	CRR073316	Gold flowering 2	1.110
	CRR073317	Gold flowering 3	0.205
	CRR073318	Tawny withering 1	3.187
	CRR073319	Tawny withering 2	3.142
	CRR073320	Tawny withering 3	4.119