Detail information of GWHGAAZE013344


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011085449.10PREDICTED: protein PAT1 homolog 1-like [Sesamum indicum]
trEMBLtr|A0A068V5U7|A0A068V5U7_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_115 {ECO:0000313|EMBL:CDP16041.1}
TAIR10AT3G22270.10Topoisomerase II-associated protein PAT1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene101109447101118751-
GWHAAZE00000003mRNA101109447101118751-
GWHAAZE00000003exon101109447101111590-
GWHAAZE00000003exon101114916101114991-
GWHAAZE00000003exon101117273101117329-
GWHAAZE00000003exon101118542101118751-
GWHAAZE00000003CDS101118542101118751-
GWHAAZE00000003CDS101117273101117329-
GWHAAZE00000003CDS101114916101114991-
GWHAAZE00000003CDS101109447101111590-
Transcript Sequence

Network for GWHGAAZE013344

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0215


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12617PATL1, PAT1 RNA degradation map03018

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf13.376
SRR3591706second leaf13.305
SRR3591707mature leaf18.605
SRR3591708Shoot apex18.468
SRR3591709Stem18.172
SRR3591710White floral bud26.029
SRR3591711White flower31.268
SRR3591712Green floral bud27.622
SRR3591713Yellow flower27.556
SRP173429 SRR8316895Juvenile bud stage 12.616
SRR8316896Juvenile bud stage 16.323
SRR8316897Juvenile bud stage 7.523
SRR8316894Third green stage 6.689
SRR8316900Third green stage 20.136
SRR8316901Third green stage 20.515
SRR8316898Complete white stage 5.697
SRR8316899Complete white stage 27.427
SRR8316903Complete white stage 13.375
SRR8316902Silver flowering stage9.646
SRR8316904Silver flowering stage12.660
SRR8316905Silver flowering stage6.927
SRR8316906Gold flowering stage 25.964
SRR8316907Gold flowering stage 22.699
SRR8316908Gold flowering stage 27.709
SRP132670SRR6706286Control24.779
SRR6706287Light intensity 50%22.698
SRR6706288Light intensity 20%21.133
CNP0000432CNS0095592Slightly white alabastrum(diploid) 113.765
CNS0095593Slightly white alabastrum(diploid) 211.286
CNS0095594Slightly white alabastrum(diploid) 311.041
CNS0095595Whole white alabastrum(diploid) 210.899
CNS0095596Whole white alabastrum(diploid) 311.034
CNS0095597Whole white alabastrum(diploid) 411.918
CNS0095598Silvery flower (diploied) 113.743
CNS0095599Silvery flower (diploied) 210.898
CNS0095600Silvery flower (diploied) 326.463
CNS0095601Golden flower (diploid) 114.262
CNS0095602Golden flower (diploid) 229.995
CNS0095603Golden flower (diploid) 328.892
CNS0095604Slightly white alabastrum(tetraploid) 114.753
CNS0095605Slightly white alabastrum(tetraploid) 212.228
CNS0095606Slightly white alabastrum(tetraploid) 330.066
CNS0095607Whole white alabastrum(tetraploid) 114.008
CNS0095608Whole white alabastrum(tetraploid) 210.938
CNS0095609Whole white alabastrum(tetraploid) 319.104
CNS0095610Silvery flower (tetraploid) 128.272
CNS0095611Silvery flower (tetraploid) 233.484
CNS0095612Silvery flower (tetraploid) 323.754
CNS0095613Golden flower (tetraploid) 119.683
CNS0095614Golden flower (tetraploid) 228.641
CNS0095615Golden flower (tetraploid) 342.485
CRA001975CRR073297Stem 134.333
CRR073298Stem 234.854
CRR073299Stem 331.860
CRR073300Leaf 134.927
CRR073301Leaf 233.238
CRR073302Leaf 323.204
CRR073303Juvenile bud 128.600
CRR073304Juvenile bud 224.909
CRR073305Juvenile bud 336.400
CRR073306Third green 115.791
CRR073307Third green 211.307
CRR073308Third green 315.723
CRR073309Second white 117.201
CRR073310Second white 220.399
CRR073311Second white 323.745
CRR073312Silver flowering 122.098
CRR073313Silver flowering 222.462
CRR073314Silver flowering 321.506
CRR073315Gold flowering 116.877
CRR073316Gold flowering 221.818
CRR073317Gold flowering 320.800
CRR073318Tawny withering 124.540
CRR073319Tawny withering 223.026
CRR073320Tawny withering 319.428