Gene detail

Detail information of GWHGAAZE013345

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP14626.1	3.4294E-147	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q67ZE1\|HSDD2_ARATH	1E-134	3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2
trEMBL	tr\|A0A068V1W2\|A0A068V1W2_COFCA	1E-147	Coffea canephora DH200=94 genomic scaffold, scaffold_90 {ECO:0000313\|EMBL:CDP14626.1}
TAIR10	AT2G26260.1	2E-111	3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	101172010	101178737	+
GWHAAZE00000003	mRNA	101172010	101178737	+
GWHAAZE00000003	exon	101172010	101172275	+
GWHAAZE00000003	exon	101172352	101172443	+
GWHAAZE00000003	exon	101174554	101174753	+
GWHAAZE00000003	exon	101176004	101176122	+
GWHAAZE00000003	exon	101177567	101177651	+
GWHAAZE00000003	exon	101178171	101178276	+
GWHAAZE00000003	exon	101178565	101178737	+
GWHAAZE00000003	CDS	101172010	101172275	+
GWHAAZE00000003	CDS	101172352	101172443	+
GWHAAZE00000003	CDS	101174554	101174753	+
GWHAAZE00000003	CDS	101176004	101176122	+
GWHAAZE00000003	CDS	101177567	101177651	+
GWHAAZE00000003	CDS	101178171	101178276	+
GWHAAZE00000003	CDS	101178565	101178737	+

Transcript Sequence
>GWHTAAZE013359 ATGGAAGGGCAAGAAAGATGGTGTGTTGTGAGTCGGGAAAGAGGCTTTGCTCCAAGACATTTAGTGGAAATGCTTATCCATTACGACATGTTTTCGGTTTGTGTTGCTAACTTGGGGATCACCCTCAAACTCGAGCCTGAAGAGGAAAAAGGAACACTTGGTGATGCTATACGAACTGGCCGTGCTCAATATGTATCCACTGATCTTCGAGACAAGTCTCAAGTAGTAAAAGGTTTTCTTCCTTCCTTCCTCTTATTTTTTCAAAGCACTCCAAGGTTGAAGTTGTTTTCCACATTCATGGCTGCTCCAGATTCCTCCATTAACAACTACCAACCTCATCATTCAGTTAATGTACAAGAAATAATGTGTTCCAACTATTTATTTCAGCACAATGATACGTATGCTGCAACTAAAGCTGAGGGAGAGGCACTGGTTATCAAGTCAAATGGTAAAAACGGGCTTCAAACATGCTGCATTCGTCCAAGCAACATTTTTGGCCCTGGTGATAAGCTGCTTGTCCCTTCTTTAGTTGCTGCTGCGAGAGCAGGGAAATCAAAGTTTATTATTGGCAACGGAAATAATATGTATGATTTTACTTACGTTGAAAATGTGGCACATGCTCATATATGTGCTGAGCAAGCTCTAGCATCAAGTGGGGAAGTTGCAGAGAGCTGCAGTATTAAGATTCCTGCCTTTGTTATGATGCCCATTGCACACATCGTTGAGCGGACATATAAGCTGTTAGAGCCATACAGGATGAAGGAGGGACCTAGGAGGACAATTGAGTCGTACTCATTCTTGAGGGCTGAACTTCAACGTAAAAAGGGAGGTCCATCGAAAGCTTCTATTTATCTTGGAAGTGGAAGGGTTGCGGACACACTTCTTTGGAGGGATAAAAAGCAGACCATGGTCACAATGCTAGTTTTGCTTGCATTTTACTTCAATTTCATAGCATCTGGATATACCGTCATTACTGTGGTCTCAAAGCTTCTAATAGTGGCGTCAATCTTTTTGTTCATCAATTTTAAGGCACTGCTTTAG

Network for GWHGAAZE013345

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01073.20	3Beta_HSD	125	219	7.70E-29
PF02453.18	Reticulon	290	340	3.00E-10

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K23558	3BETAHSDD	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Steroid biosynthesis	map00100

Gene Ontology

GO term	Ontology	Name
GO:0006694	biological_process	steroid biosynthetic process
GO:0055114	biological_process	oxidation-reduction process
GO:0003854	molecular_function	3-beta-hydroxy-delta5-steroid dehydrogenase activity
GO:0016616	molecular_function	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.151
	SRR3591712	Green floral bud	0.017
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.056
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.051
	SRR8316900	Third green stage	0.045
	SRR8316901	Third green stage	0.000
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.102
	SRR8316903	Complete white stage	0.050
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.285
	SRR6706287	Light intensity 50%	0.109
	SRR6706288	Light intensity 20%	0.114
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.000
	CNS0095593	Slightly white alabastrum(diploid) 2	0.300
	CNS0095594	Slightly white alabastrum(diploid) 3	0.119
	CNS0095595	Whole white alabastrum(diploid) 2	0.213
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.201
	CNS0095598	Silvery flower (diploied) 1	0.058
	CNS0095599	Silvery flower (diploied) 2	0.254
	CNS0095600	Silvery flower (diploied) 3	0.162
	CNS0095601	Golden flower (diploid) 1	0.210
	CNS0095602	Golden flower (diploid) 2	0.097
	CNS0095603	Golden flower (diploid) 3	0.113
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.146
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.040
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.002
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.331
	CRR073317	Gold flowering 3	0.041
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000