Gene detail

Detail information of GWHGAAZE013365

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002282578.1	1.7446E-110	PREDICTED: zinc finger protein CONSTANS-LIKE 16 [Vitis vinifera]
Swissprot	tr\|Q8LG76\|COL6_ARATH	1E-78	Zinc finger protein CONSTANS-LIKE 6
trEMBL	tr\|D7T949\|D7T949_VITVI	7E-111	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI27020.3}
TAIR10	AT1G25440.1	2E-63	B-box type zinc finger protein with CCT domain

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	101485194	101486430	-
GWHAAZE00000003	mRNA	101485194	101486430	-
GWHAAZE00000003	exon	101485194	101485412	-
GWHAAZE00000003	exon	101485639	101486430	-
GWHAAZE00000003	CDS	101485639	101486430	-
GWHAAZE00000003	CDS	101485194	101485412	-

Transcript Sequence
>GWHTAAZE013379 ATGGTCTCAAACTTATCTAACGCAATGGCAGGAAAAACGGCTAGAGCCTGTGACAGTTGTATTCGTAAGCGGGCTCGATGGTACTGTGCCGCTGACGATGCTTTTCTGTGCCAATCTTGTGATGGTTCTGTCCATTCTGCCAACCCGTTGGCACGTAGACACGATAGGGTCCGGCTCAAGACTGCATCGGTCGAGCCCCCGTGGACCACTGGGTTCACTAGAAAGGCACGAACACCACGGAAGAAATCAAAGTCCAATGGGTATATACGGGACCCGATTGATGACCGGGTACCGGAGATAGGGGCCGACGAGACTACGTCCTATGATGAGACGAGTGAAGAACATGTTGTGTATAGGGTACCATTTATTGGGAATGGGAATATTGATAATTATATGGAGTTTGATGATTTTGGAGGTGATGTTGAGAGCTTGTTAGGTTTTGATATGGAAGATTTGGGTTTGGTGAATTGTGGAGAGGACTCTATGGAGGGTTCTTCGGGTAGCGGCGGAAGAGTGAAATTTGAAAAAGAAGAAGAAATGGATATTATAGTCAATGATCAAGTTGATAGGGAAAGAGAGAGATTTGAGGTGAATTTTAATAATTATGAATGTACTCCTTTAATGGCAATGAAGGAGAGTAGTGAAGATTTTGAAGTGGGGGATGTGAAGAGGAAGGTTTTGTTGGCGCTTGATTATGAAGGAGTCATTGCAGCTTGGACTAGTGAGAGGTCTCCGTGGACTACTGGAGACCGACCGGAGGTGGATCCGAATGACAGTTGGCTGCACTGCATGGGTAATAGTGGAACAATTTACTACCCGTATGGAGATCAAATGGGAGGGCAGAATGGGGGGATATTGGATGGAGGGAGAGAAGCAAGAGTAACAAGGTACAGAGAAAAGAGGCGAAACAGATTGTTTTCAAAGAAAATAAGGTACGAGGTTCGCAAATTGAATGCAGAAAAGAGGCCTAGAATGAAAGGAAGGTTTGTTAAGAGGTCCAATTTTGCAACC

Network for GWHGAAZE013365

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00643.25	zf-B_box	14	57	4.20E-07
PF06203.15	CCT	290	332	6.10E-18

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	C2C2-CO-like

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0008270	molecular_function	zinc ion binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	10.573
	SRR3591706	second leaf	7.897
	SRR3591707	mature leaf	5.315
	SRR3591708	Shoot apex	9.893
	SRR3591709	Stem	9.177
	SRR3591710	White floral bud	0.591
	SRR3591711	White flower	0.919
	SRR3591712	Green floral bud	0.173
	SRR3591713	Yellow flower	0.219
SRP173429	SRR8316895	Juvenile bud stage	1.687
	SRR8316896	Juvenile bud stage	1.452
	SRR8316897	Juvenile bud stage	0.641
	SRR8316894	Third green stage	0.356
	SRR8316900	Third green stage	0.164
	SRR8316901	Third green stage	0.294
	SRR8316898	Complete white stage	0.085
	SRR8316899	Complete white stage	0.774
	SRR8316903	Complete white stage	0.669
	SRR8316902	Silver flowering stage	0.141
	SRR8316904	Silver flowering stage	0.176
	SRR8316905	Silver flowering stage	0.068
	SRR8316906	Gold flowering stage	0.155
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.156
SRP132670	SRR6706286	Control	0.386
	SRR6706287	Light intensity 50%	0.143
	SRR6706288	Light intensity 20%	0.050
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.963
	CNS0095593	Slightly white alabastrum(diploid) 2	1.543
	CNS0095594	Slightly white alabastrum(diploid) 3	0.526
	CNS0095595	Whole white alabastrum(diploid) 2	0.680
	CNS0095596	Whole white alabastrum(diploid) 3	0.118
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	2.092
	CNS0095599	Silvery flower (diploied) 2	1.005
	CNS0095600	Silvery flower (diploied) 3	0.402
	CNS0095601	Golden flower (diploid) 1	1.009
	CNS0095602	Golden flower (diploid) 2	0.855
	CNS0095603	Golden flower (diploid) 3	0.786
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.890
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.584
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.349
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.719
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.240
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.139
	CNS0095610	Silvery flower (tetraploid) 1	0.828
	CNS0095611	Silvery flower (tetraploid) 2	0.184
	CNS0095612	Silvery flower (tetraploid) 3	8.324
	CNS0095613	Golden flower (tetraploid) 1	0.373
	CNS0095614	Golden flower (tetraploid) 2	0.425
	CNS0095615	Golden flower (tetraploid) 3	0.284
CRA001975	CRR073297	Stem 1	32.803
	CRR073298	Stem 2	29.598
	CRR073299	Stem 3	24.813
	CRR073300	Leaf 1	5.679
	CRR073301	Leaf 2	7.136
	CRR073302	Leaf 3	3.390
	CRR073303	Juvenile bud 1	1.896
	CRR073304	Juvenile bud 2	0.283
	CRR073305	Juvenile bud 3	4.887
	CRR073306	Third green 1	0.278
	CRR073307	Third green 2	0.200
	CRR073308	Third green 3	0.453
	CRR073309	Second white 1	0.104
	CRR073310	Second white 2	0.703
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.248
	CRR073313	Silver flowering 2	0.068
	CRR073314	Silver flowering 3	0.071
	CRR073315	Gold flowering 1	73.424
	CRR073316	Gold flowering 2	85.769
	CRR073317	Gold flowering 3	55.143
	CRR073318	Tawny withering 1	36.319
	CRR073319	Tawny withering 2	16.410
	CRR073320	Tawny withering 3	26.741