Gene detail

Detail information of GWHGAAZE013367

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002282549.1	0	PREDICTED: homocysteine S-methyltransferase 1 [Vitis vinifera]
Swissprot	tr\|A4ZGQ8\|HMT1_BRAOT	0	Homocysteine S-methyltransferase 1
trEMBL	tr\|D7T951\|D7T951_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI27022.3}
TAIR10	AT3G25900.1	1E-151	Homocysteine S-methyltransferase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	101501535	101504136	-
GWHAAZE00000003	mRNA	101501535	101504136	-
GWHAAZE00000003	exon	101503838	101504136	-
GWHAAZE00000003	exon	101503531	101503587	-
GWHAAZE00000003	exon	101502798	101503003	-
GWHAAZE00000003	exon	101502588	101502717	-
GWHAAZE00000003	exon	101502263	101502466	-
GWHAAZE00000003	exon	101502070	101502141	-
GWHAAZE00000003	exon	101501535	101501675	-
GWHAAZE00000003	five_prime_UTR	101504009	101504136	-
GWHAAZE00000003	CDS	101503838	101504008	-
GWHAAZE00000003	CDS	101503531	101503587	-
GWHAAZE00000003	CDS	101502798	101503003	-
GWHAAZE00000003	CDS	101502588	101502717	-
GWHAAZE00000003	CDS	101502263	101502466	-
GWHAAZE00000003	CDS	101502070	101502141	-
GWHAAZE00000003	CDS	101501535	101501675	-

Transcript Sequence
>GWHTAAZE013381 ACTCTATCTGTTCAATTCCTTCCCATAACTTTGCTTGCTTATAATAATTATAATAATATACGGCTGGTCTATATATATATATATAGACAGACAGACAGACAGAGAAAGTTCAAATAAATATAATAATAATGGGAATCGAAAGGATAACGTCGTCTTTGGATGATCTGATAGAGAAAGCCGGTGGTTGCGCCGTCATTGACGGTGGCTTCGCAACTCAGCTAGAGAAACACGGGGCTTCCATTAACGACCCTCTTTGGAGTGCTCTTTCTTTAATCAAAGATCCTGATCTTATCAAACGCGTTCATTTAGAATATTTAGAGGCGGGTGCGGATATATTGGTAACTTCATCTTATCAGGCTACTATTCCAGGATTCGTATCAAGGGGTTTATCAATTGAAGAAGCAGAACTACTACTAAAAACGAGTGTAAAGTTAGCTGTTGAGGCCCGCAATAAGTTCTGGGATGCCACAGAAAAGATATCTGGATATAACTATAACAGGGCTTTGGTTGCAGCCTCCATTGGAAGCTACGGTGCTTTTCTTGCAGATGGCTCTGAATATAGTGGGCTTTACGGACCACAAGTGAATTTGGATAAGCTGAAGGATTTTCATAGGCGAAGATTGCAAGTTCTCGTGGAAGCAGGTCCTGATCTGCTGGCTTTTGAGACCATTCCTAATAAACTTGAAGCACAGGCGTGTGTTGAATTGCTTGAAGAAGAAAATGTGCAAATACCATCTTGGATCTGTTTCAGCTCTGTGGATGGAGAAAATGCACCTTCAGGGGAGAGCTTTAAGGAGTGCCTTGATGTAATAAACCAGAGTAGTAGAGTTACTGCAGCTGGAATCAATTGTGCACCACCCCATTTTGTTCATACCCTCGTCCAGAAATTCAAAGAGTTGACCGCAAAGATCATAGTTGTCTATCCCAACAGTGGCGAGATATGGGACGGTGTAGCCAAAAGATGGCTGCCATCAAAGTGTTTTGATGACGACAAATTCGAGCTGTATGCAACAAGATGGCGAGATTTAGGAGCTCAACTTATTGGTGGCTGCTGTAGAACCACACCTTTAACTGTTAGAGCCATTTCAAAGGTTCTAAAAGAGAATTAG

Network for GWHGAAZE013367

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02574.17	S-methyl_trans	22	322	1.20E-72

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00547	mmuM, BHMT2	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Cysteine and methionine metabolism	map00270

Gene Ontology

GO term	Ontology	Name
GO:0009086	biological_process	methionine biosynthetic process
GO:0008270	molecular_function	zinc ion binding
GO:0047150	molecular_function	betaine-homocysteine S-methyltransferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.931
	SRR3591706	second leaf	4.887
	SRR3591707	mature leaf	0.221
	SRR3591708	Shoot apex	3.608
	SRR3591709	Stem	7.564
	SRR3591710	White floral bud	2.494
	SRR3591711	White flower	1.351
	SRR3591712	Green floral bud	2.649
	SRR3591713	Yellow flower	0.915
SRP173429	SRR8316895	Juvenile bud stage	2.048
	SRR8316896	Juvenile bud stage	3.085
	SRR8316897	Juvenile bud stage	1.691
	SRR8316894	Third green stage	1.666
	SRR8316900	Third green stage	4.287
	SRR8316901	Third green stage	3.282
	SRR8316898	Complete white stage	0.236
	SRR8316899	Complete white stage	2.321
	SRR8316903	Complete white stage	0.833
	SRR8316902	Silver flowering stage	0.142
	SRR8316904	Silver flowering stage	0.500
	SRR8316905	Silver flowering stage	0.206
	SRR8316906	Gold flowering stage	2.164
	SRR8316907	Gold flowering stage	1.172
	SRR8316908	Gold flowering stage	5.236
SRP132670	SRR6706286	Control	3.480
	SRR6706287	Light intensity 50%	2.812
	SRR6706288	Light intensity 20%	3.244
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.141
	CNS0095593	Slightly white alabastrum(diploid) 2	2.850
	CNS0095594	Slightly white alabastrum(diploid) 3	3.768
	CNS0095595	Whole white alabastrum(diploid) 2	2.093
	CNS0095596	Whole white alabastrum(diploid) 3	2.557
	CNS0095597	Whole white alabastrum(diploid) 4	1.906
	CNS0095598	Silvery flower (diploied) 1	1.429
	CNS0095599	Silvery flower (diploied) 2	0.722
	CNS0095600	Silvery flower (diploied) 3	1.327
	CNS0095601	Golden flower (diploid) 1	1.264
	CNS0095602	Golden flower (diploid) 2	1.213
	CNS0095603	Golden flower (diploid) 3	1.093
	CNS0095604	Slightly white alabastrum(tetraploid) 1	10.936
	CNS0095605	Slightly white alabastrum(tetraploid) 2	13.002
	CNS0095606	Slightly white alabastrum(tetraploid) 3	16.946
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.046
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.224
	CNS0095609	Whole white alabastrum(tetraploid) 3	7.771
	CNS0095610	Silvery flower (tetraploid) 1	1.172
	CNS0095611	Silvery flower (tetraploid) 2	0.777
	CNS0095612	Silvery flower (tetraploid) 3	1.447
	CNS0095613	Golden flower (tetraploid) 1	2.288
	CNS0095614	Golden flower (tetraploid) 2	2.947
	CNS0095615	Golden flower (tetraploid) 3	0.526
CRA001975	CRR073297	Stem 1	3.142
	CRR073298	Stem 2	2.898
	CRR073299	Stem 3	2.942
	CRR073300	Leaf 1	2.827
	CRR073301	Leaf 2	2.927
	CRR073302	Leaf 3	1.516
	CRR073303	Juvenile bud 1	0.592
	CRR073304	Juvenile bud 2	0.199
	CRR073305	Juvenile bud 3	1.047
	CRR073306	Third green 1	1.242
	CRR073307	Third green 2	0.695
	CRR073308	Third green 3	0.437
	CRR073309	Second white 1	0.754
	CRR073310	Second white 2	0.572
	CRR073311	Second white 3	0.206
	CRR073312	Silver flowering 1	1.619
	CRR073313	Silver flowering 2	0.649
	CRR073314	Silver flowering 3	0.882
	CRR073315	Gold flowering 1	1.589
	CRR073316	Gold flowering 2	1.695
	CRR073317	Gold flowering 3	2.261
	CRR073318	Tawny withering 1	11.219
	CRR073319	Tawny withering 2	14.201
	CRR073320	Tawny withering 3	11.122