Gene detail

Detail information of GWHGAAZE013368

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_008339680.1	PREDICTED: 3-ketoacyl-CoA synthase 6 [Malus domestica]
Swissprot	tr\|Q9XF43\|KCS6_ARATH	3-ketoacyl-CoA synthase 6
trEMBL	tr\|I1E3D2\|I1E3D2_ARAHY	3-ketoacyl-CoA synthase {ECO:0000256\|PIRNR:PIRNR036417}
TAIR10	AT1G68530.1	3-ketoacyl-CoA synthase 6

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	101520671	101522911	-
GWHAAZE00000003	mRNA	101520671	101522911	-
GWHAAZE00000003	exon	101520671	101521113	-
GWHAAZE00000003	exon	101521999	101522911	-
GWHAAZE00000003	CDS	101521999	101522911	-
GWHAAZE00000003	CDS	101520671	101521113	-

Transcript Sequence
>GWHTAAZE013382 ATGCCACAACCGTTAATGCCGAATTTCAACAATTCCGTCAAGCTCAAGTACGTAAAACTCGGCTACCAGTACCTCATCAACCACTTCCTCACCTTCACACTCCTCCCTATAACCCTCACCCTCCTTCTCCAACTCCGTTACAGCCCTGACGAATACCTCCGCTTATGGAACTCGCTCCGTTTCGATTTAATCCATGTCCTATGCTCCGCCTTTCTCATAATCATGATCTCCACCATATACTTCACGACAAAGCCCCGTTCTGTTTACCTAGTCGACTATGCGTGTTTCAAGCCCCCACGTGCTTGTCGAGCCCCTTTCTCCACCTTCATGGAACACTCCAAACTCATACTAAACTCCGAGCCGAAAAGTGTTGATTTTCAAATGAAAATCCTAGAACGGTCCGGGTTAGGCGAAGAAACGTGTTTGCCCATAGCCATACATTTTATACCTCCATCACCTACCTTGGAAGCTTCTAGAGGGGAGGCCGAACTGGTAATTTTCTCGGCTATGGACTCGCTTTTTGAAAAAACAGGAATCAAGCCTAACGATGTTCATATACTTGTAGTGAATTGTAGTTTGTTTTCGCCAACTCCATCTTTATCGGCTATGGTGATCAATAAGTATAAGATGAGGGGGAATGTGAAGAGCTATAATTTGTCTGGGATGGGGTGTAGTGCGGGTTTGATTTCGATTGATTTGGCGCGTGATCTTCTTAAAGTTCATAAGAATTCGAATGCGATAGTTGTGAGCACTGAGATTATAACTCCTAATTATTATCAAGGGAAGGAGAGGTCAATGCTTGTGCCTAATTGTTTGTTTCGAATGGGCGGGGCTGCTGTTTTGTTGTCTAACCGGAGGACTTTCCGCACGCAAGCCAAGTATCGTCTACTTCACGTGGTTCGGACCCAAAAAGGCGCGGACGATAAGGCTTTTCGTTGTGTGTACGAAGAAGAAGACCGGGAGGGCAAAGTAGGAATATCACTCTCAAAAGACCTAATGGCAATAGCTGGCGTGGCCTTAAAATCAAACATTACCACCCTAGGCCCCCTAGTCCTTCCCACATCAGAACAAATCCTCTTCTTAATCTCTCTAATCAGCCGCAAAATCTTCAATCCAAAAGGGAAACCCTACATCCCGGATTTCAAGCAAGCCTTTGAGCATTTTTGCATCCACGCTGGCGGCCGAGCTGTCATAGACGAGCTCCAAAAGAACCTCCAGCTGTCGGCTGAACACGTGGAGGCCTCCAGAATGACACTACATAGATTTGGTAACACGTCATCGTCTTCTTTGTGGTATGAGTTGAGTTATATCGAGGCTAAGGGGAGAATGAAAAGAGGGGATAGAGTTTGGCAATAG

Network for GWHGAAZE013368

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08392.13	FAE1_CUT1_RppA	80	368	2.20E-136
PF08541.11	ACP_syn_III_C	384	449	3.00E-07

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K15397	KCS	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Fatty acid elongation	map00062
		Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0006633	biological_process	fatty acid biosynthetic process
GO:0016020	cellular_component	membrane
GO:0003824	molecular_function	catalytic activity
GO:0016747	molecular_function	transferase activity, transferring acyl groups other than amino-acyl groups

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.182
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.783
	SRR3591709	Stem	0.162
	SRR3591710	White floral bud	5.983
	SRR3591711	White flower	0.246
	SRR3591712	Green floral bud	7.524
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.745
	SRR8316896	Juvenile bud stage	2.136
	SRR8316897	Juvenile bud stage	0.828
	SRR8316894	Third green stage	1.131
	SRR8316900	Third green stage	10.730
	SRR8316901	Third green stage	5.297
	SRR8316898	Complete white stage	2.069
	SRR8316899	Complete white stage	6.089
	SRR8316903	Complete white stage	3.636
	SRR8316902	Silver flowering stage	0.841
	SRR8316904	Silver flowering stage	0.791
	SRR8316905	Silver flowering stage	0.483
	SRR8316906	Gold flowering stage	0.192
	SRR8316907	Gold flowering stage	0.833
	SRR8316908	Gold flowering stage	0.413
SRP132670	SRR6706286	Control	33.091
	SRR6706287	Light intensity 50%	33.176
	SRR6706288	Light intensity 20%	34.483
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.025
	CNS0095593	Slightly white alabastrum(diploid) 2	1.644
	CNS0095594	Slightly white alabastrum(diploid) 3	0.951
	CNS0095595	Whole white alabastrum(diploid) 2	1.110
	CNS0095596	Whole white alabastrum(diploid) 3	0.901
	CNS0095597	Whole white alabastrum(diploid) 4	1.724
	CNS0095598	Silvery flower (diploied) 1	0.513
	CNS0095599	Silvery flower (diploied) 2	0.263
	CNS0095600	Silvery flower (diploied) 3	1.249
	CNS0095601	Golden flower (diploid) 1	0.266
	CNS0095602	Golden flower (diploid) 2	0.427
	CNS0095603	Golden flower (diploid) 3	0.258
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.760
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.565
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.628
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.965
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.201
	CNS0095609	Whole white alabastrum(tetraploid) 3	43.136
	CNS0095610	Silvery flower (tetraploid) 1	0.546
	CNS0095611	Silvery flower (tetraploid) 2	0.632
	CNS0095612	Silvery flower (tetraploid) 3	0.774
	CNS0095613	Golden flower (tetraploid) 1	0.003
	CNS0095614	Golden flower (tetraploid) 2	0.106
	CNS0095615	Golden flower (tetraploid) 3	0.078
CRA001975	CRR073297	Stem 1	2.080
	CRR073298	Stem 2	1.177
	CRR073299	Stem 3	1.005
	CRR073300	Leaf 1	7.690
	CRR073301	Leaf 2	6.761
	CRR073302	Leaf 3	6.055
	CRR073303	Juvenile bud 1	6.045
	CRR073304	Juvenile bud 2	10.254
	CRR073305	Juvenile bud 3	7.580
	CRR073306	Third green 1	2.190
	CRR073307	Third green 2	1.610
	CRR073308	Third green 3	2.736
	CRR073309	Second white 1	0.237
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.039
	CRR073312	Silver flowering 1	0.070
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.238
	CRR073315	Gold flowering 1	0.149
	CRR073316	Gold flowering 2	0.178
	CRR073317	Gold flowering 3	0.011
	CRR073318	Tawny withering 1	0.072
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000