Gene detail

Detail information of GWHGAAZE013382

Functional Annotation

Database	Orthologs	Annotation
Nr	KDP29385.1	hypothetical protein JCGZ_18306 [Jatropha curcas]
Swissprot	tr\|Q38950\|2AAB_ARATH	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform
trEMBL	tr\|A0A067KAU6\|A0A067KAU6_JATCU	Uncharacterized protein {ECO:0000313\|EMBL:KDP29385.1}
TAIR10	AT3G25800.1	protein phosphatase 2A subunit A2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	101789244	101796203	+
GWHAAZE00000003	mRNA	101789244	101796203	+
GWHAAZE00000003	exon	101789244	101789636	+
GWHAAZE00000003	exon	101790095	101790341	+
GWHAAZE00000003	exon	101792762	101792874	+
GWHAAZE00000003	exon	101793356	101793439	+
GWHAAZE00000003	exon	101793695	101793826	+
GWHAAZE00000003	exon	101793932	101794012	+
GWHAAZE00000003	exon	101794411	101794515	+
GWHAAZE00000003	exon	101794636	101794818	+
GWHAAZE00000003	exon	101795066	101795158	+
GWHAAZE00000003	exon	101795281	101795420	+
GWHAAZE00000003	exon	101795514	101795580	+
GWHAAZE00000003	exon	101796087	101796203	+
GWHAAZE00000003	CDS	101789244	101789636	+
GWHAAZE00000003	CDS	101790095	101790341	+
GWHAAZE00000003	CDS	101792762	101792874	+
GWHAAZE00000003	CDS	101793356	101793439	+
GWHAAZE00000003	CDS	101793695	101793826	+
GWHAAZE00000003	CDS	101793932	101794012	+
GWHAAZE00000003	CDS	101794411	101794515	+
GWHAAZE00000003	CDS	101794636	101794818	+
GWHAAZE00000003	CDS	101795066	101795158	+
GWHAAZE00000003	CDS	101795281	101795420	+
GWHAAZE00000003	CDS	101795514	101795580	+
GWHAAZE00000003	CDS	101796087	101796203	+

Transcript Sequence
>GWHTAAZE013396 ATGTCAATGGTTGATGAGCCGCTGTACCCAATAGCCGTCCTGATTGATGAGTTGAAGAATGACGATATTCAATTGCGGTTGAATTCTATTCGGAGGCTATCAACAATTGCTCGTGCGCTTGGGGAGGAGCGAACACGGAAGGAATTAATCCCATTTTTGAGCGAAAACAATGACGATGATGATGAGGTGCTTCTGGCGATGGCAGAAGAATTGGGCGTGTTTATTCCATATGTTGGAGGAGTGGAACATGCCCATGTTTTGCTCCCTCCTTTGGAAACCCTTTGCACTGTTGAGGAAACCTGTGTGAGGGATAAAGCCGTGGAATCACTTTGTAGAATTGGATCTCAGATGAGGGAGAGTGATTTGGTTGATTGGTTTATACCTCTGGTGAAGAGGCTGGCAGCCGGTGAATGGTTTACAGCGCGGGTTTCTGCCTGTGGATTGTTTCACATTGCTTATCCCAGTGCTCCAGAGATGTTAAAGACAGAGTTACGTTCAATATACAGTCAGTTGTGTCAAGATGACATGCCTATGGTGAGGAGGTCAGCTGCTACAAACTTGGGGAAGTTTGCTGCTACTGTTGAAGCTGCTCATCTCAAGACCGACATCATGTCCATATTTGAGGATCTTACACAGGATGATCAAGATTCTGTTCGCTTACTCGCTGTTGAGGGATGTGCTGCTCTTGGGAAGTTGTTGGAGCCCCAGGACTGTGTTGCACATATTCTCCCTGTCATTGTCAGTTTTTCTCAGGATAAGTCCTGGCGCGTACGATACATGGTTGCCAATCAGCTGTATGAGCTATGTGAGGCAGTGGGTCCTGAACCTACCAGGTATGTTCCTGCATATGTGCGGCTACTTCGAGATAATGAAGCTGAAGTACGTATAGCAGCCGCTGGCAAAGTCACCAAGTTCTGCCGGATTCTTAATCCAGAACTTGCAATTCAGCACATTCTTCCCTGTGTGAAGGAATTATCGTCAGATTCTTCTCAGCATGTTAGGTCTGCTCTGGCCTCTGTTATAATGGGCATGGCTCCTGTTTTAGGAAAGGATGCGACAATAGAACAGCTTCTTCCAATATTTCTTTCTCTTCTAAAAGATGAATTTCCCGATGTACGACTCAATATTATTAGCAAGCTAGATCAAGTCAATCAGGTCATTGGAATCGATCTTTTGTCCCAATCTCTACTACCGGCTATTGTTGAGCTTGCGGAGGATAGGCATTGGAGGGTTCGGCTTGCAATAATAGAGTATATACCTCTATTGGCTAGTCAGTTAGGTGTTGGATTTTTTGATGATAAGCTTGGTGCTCTCTGCATGCAGTGGTTACAGGATAAGGTTTACTCAATTCGAGATGCTGCTGCTAATAATCTGAAGCGCCTTGCAGAAGAATTTGGTCCAGAGTGGGCAATGCAGCACATCATTCCACAGGTTTTGGATATGATTAACAACTCACATTACTTGTATCGGATGACAATCCTTCGCGCAATTTCCTTGCTTGCCCCTGTCATGGGCTCCGAAATAACATGTTCTAAATTGCTGCCTGTTGTTGTCACTGTATCAAAGGACAGAGTGGCCAACATTAAGTTTAATGTTGCAAAAGTCTTGCAATCCCTTATTCCCATCGTTGACCAATCTGTGGTGGAGAAGACAATTCGGCCGTGTCTGGTTGAGCTGGCTGAGGACCCTGACGTTGATGTCCGTTTTTTTGCCAACCAAGCGCTACAAGCAATTGATCATGTCATGATGAGCTAG

Network for GWHGAAZE013382

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0076
CFinderModule0126

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02985.23	HEAT	242	270	0.00024
PF13646.7	HEAT_2	359	459	4.80E-12

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03456	PPP2R1	mRNA surveillance pathway	map03015
		TGF-beta signaling pathway	map04350
		Hippo signaling pathway	map04390
		Hippo signaling pathway - fly	map04391
		Sphingolipid signaling pathway	map04071
		PI3K-Akt signaling pathway	map04151
		AMPK signaling pathway	map04152
		Cell cycle - yeast	map04111
		Meiosis - yeast	map04113
		Oocyte meiosis	map04114
		Tight junction	map04530
		Adrenergic signaling in cardiomyocytes	map04261
		Dopaminergic synapse	map04728
		Long-term depression	map04730

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	134.306
	SRR3591706	second leaf	67.668
	SRR3591707	mature leaf	53.177
	SRR3591708	Shoot apex	93.725
	SRR3591709	Stem	101.728
	SRR3591710	White floral bud	130.466
	SRR3591711	White flower	148.294
	SRR3591712	Green floral bud	148.214
	SRR3591713	Yellow flower	142.794
SRP173429	SRR8316895	Juvenile bud stage	74.420
	SRR8316896	Juvenile bud stage	109.757
	SRR8316897	Juvenile bud stage	56.020
	SRR8316894	Third green stage	48.070
	SRR8316900	Third green stage	155.419
	SRR8316901	Third green stage	150.163
	SRR8316898	Complete white stage	65.613
	SRR8316899	Complete white stage	156.731
	SRR8316903	Complete white stage	95.513
	SRR8316902	Silver flowering stage	63.544
	SRR8316904	Silver flowering stage	86.485
	SRR8316905	Silver flowering stage	43.592
	SRR8316906	Gold flowering stage	140.964
	SRR8316907	Gold flowering stage	134.063
	SRR8316908	Gold flowering stage	157.344
SRP132670	SRR6706286	Control	110.681
	SRR6706287	Light intensity 50%	118.149
	SRR6706288	Light intensity 20%	127.064
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	90.070
	CNS0095593	Slightly white alabastrum(diploid) 2	89.497
	CNS0095594	Slightly white alabastrum(diploid) 3	80.906
	CNS0095595	Whole white alabastrum(diploid) 2	92.630
	CNS0095596	Whole white alabastrum(diploid) 3	97.826
	CNS0095597	Whole white alabastrum(diploid) 4	86.237
	CNS0095598	Silvery flower (diploied) 1	78.116
	CNS0095599	Silvery flower (diploied) 2	76.225
	CNS0095600	Silvery flower (diploied) 3	164.142
	CNS0095601	Golden flower (diploid) 1	71.304
	CNS0095602	Golden flower (diploid) 2	160.374
	CNS0095603	Golden flower (diploid) 3	152.029
	CNS0095604	Slightly white alabastrum(tetraploid) 1	122.517
	CNS0095605	Slightly white alabastrum(tetraploid) 2	99.586
	CNS0095606	Slightly white alabastrum(tetraploid) 3	157.581
	CNS0095607	Whole white alabastrum(tetraploid) 1	92.883
	CNS0095608	Whole white alabastrum(tetraploid) 2	94.920
	CNS0095609	Whole white alabastrum(tetraploid) 3	169.265
	CNS0095610	Silvery flower (tetraploid) 1	164.045
	CNS0095611	Silvery flower (tetraploid) 2	149.841
	CNS0095612	Silvery flower (tetraploid) 3	152.157
	CNS0095613	Golden flower (tetraploid) 1	97.865
	CNS0095614	Golden flower (tetraploid) 2	143.699
	CNS0095615	Golden flower (tetraploid) 3	161.087
CRA001975	CRR073297	Stem 1	149.343
	CRR073298	Stem 2	140.951
	CRR073299	Stem 3	164.951
	CRR073300	Leaf 1	174.927
	CRR073301	Leaf 2	170.042
	CRR073302	Leaf 3	193.834
	CRR073303	Juvenile bud 1	202.128
	CRR073304	Juvenile bud 2	171.516
	CRR073305	Juvenile bud 3	201.692
	CRR073306	Third green 1	138.498
	CRR073307	Third green 2	128.020
	CRR073308	Third green 3	126.307
	CRR073309	Second white 1	175.877
	CRR073310	Second white 2	142.108
	CRR073311	Second white 3	150.846
	CRR073312	Silver flowering 1	181.418
	CRR073313	Silver flowering 2	217.942
	CRR073314	Silver flowering 3	178.019
	CRR073315	Gold flowering 1	64.127
	CRR073316	Gold flowering 2	85.427
	CRR073317	Gold flowering 3	82.089
	CRR073318	Tawny withering 1	152.794
	CRR073319	Tawny withering 2	113.158
	CRR073320	Tawny withering 3	167.185