Gene detail

Detail information of GWHGAAZE013390

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_003631224.1	1.1048E-136	PREDICTED: probable transcription factor GLK2 [Vitis vinifera]
Swissprot	tr\|Q9LTH4\|PCLL_ARATH	2E-15	Transcription factor BOA
trEMBL	tr\|D7T987\|D7T987_VITVI	5E-136	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI27058.3}
TAIR10	AT1G25550.1	9E-72	myb-like transcription factor family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	101894465	101898241	-
GWHAAZE00000003	mRNA	101894465	101898241	-
GWHAAZE00000003	exon	101894465	101894794	-
GWHAAZE00000003	exon	101896998	101897074	-
GWHAAZE00000003	exon	101897270	101897534	-
GWHAAZE00000003	exon	101897735	101898241	-
GWHAAZE00000003	CDS	101897735	101898241	-
GWHAAZE00000003	CDS	101897270	101897534	-
GWHAAZE00000003	CDS	101896998	101897074	-
GWHAAZE00000003	CDS	101894465	101894794	-

Transcript Sequence
>GWHTAAZE013404 ATGGGCGATACGGAGAAAATGCAGAGATGTAAAGATTATATTGAAGCTTTAGAACAAGAAAAGCGCAAAATTCAGGTCTTCGAACGAGAACTCCCTCTATGTCTTGAACTTGTGAGTCAAGGTATATATCATATATACGATATTAATATTTATTCTATAATTACCCATTTGATTATTATTTTTTTACACAATTTGATAATTGGTGGGTTTTTTTTTAAAGCTGTTGAGAAATGCAAGCAAGAGGTGTGTGGATCGAACTTGGAGTATTTTCGGGGGCAATTTGAGTGTTCGGAACAGACATCTAGTGAAGGCCCCGTTTTGGAAGAATTCATTCCTATAAAGAGGGCTTCCTCTTCTGAAGAAGATGATGAACATAATCATAAATCTAGAAAATCGAAAACCGTTAGTAATGATAGCAAGAGCAGTGAGAAGTTATCGACGAAATCGGACTGGCTTAGATCTGTTCAGTTATGGAATCAGACCCCAGATCCATCATCCATCAAAGAGGAATCGCCGAGAAAAGTGTCAGTGATGGAGGTGAATAGAAATGGGGGAGGTACTGGTGCCTTTCATCCTTTTAAGAGAGAGAAAAGTGTTGCCGCACCACCACCGGCTCCGGCGGCTGCCGCCAGTTCTAGTGCGGAGAACGGCGGTGGTGGAAGTAAGGGTGAGGACAAAGGAGAACATTCACAGAGGAAGTCAAGGCGGTGCTGGTCGCCGGAGTTGCATCGCCGGTTCTTGCAAGCCCTTCAACAACTCGGTGGTTCTCATGTTGCTACACCGAAGCAAATTAGGGAGTTAATGAAGGTTGATGGACTCACTAACGATGAAGTCAAAAGCCATTTACAGAAATATAGACTGCACACGAGAAGACCAAGTCCTTCAGTTCGGAATAACAACAACCAGCAAGCACCCCAATTTGTAGTGGTGGGAGGAATATGGGTTCCACCACCCGATTTTGCCGCCATGGCTAAAGCAACAGAAGGGTCCACACGTTCGGCTCCTATTGAAATATACGCACCAAAAGCCGCATTGCCTCAATTGAACTCTCAAAACCAAAGGCATAAGGAATCAGGTTCCAATGTAAAGGGCAGCCATAGCGATCAAGCCGGTGTTCATTCAAATTCCCCATCTCCCTCGTCTTCCACTCATACCAGGACAGCTTCGACTGAGTTTTGA

Network for GWHGAAZE013390

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.32	Myb_DNA-binding	235	286	5.50E-07

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	GARP-G2-like

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	6.343
	SRR3591706	second leaf	5.677
	SRR3591707	mature leaf	4.039
	SRR3591708	Shoot apex	8.315
	SRR3591709	Stem	6.652
	SRR3591710	White floral bud	4.657
	SRR3591711	White flower	12.488
	SRR3591712	Green floral bud	1.515
	SRR3591713	Yellow flower	15.488
SRP173429	SRR8316895	Juvenile bud stage	5.138
	SRR8316896	Juvenile bud stage	6.396
	SRR8316897	Juvenile bud stage	2.444
	SRR8316894	Third green stage	3.334
	SRR8316900	Third green stage	2.307
	SRR8316901	Third green stage	3.990
	SRR8316898	Complete white stage	2.262
	SRR8316899	Complete white stage	2.202
	SRR8316903	Complete white stage	6.156
	SRR8316902	Silver flowering stage	9.716
	SRR8316904	Silver flowering stage	9.781
	SRR8316905	Silver flowering stage	6.333
	SRR8316906	Gold flowering stage	29.351
	SRR8316907	Gold flowering stage	33.964
	SRR8316908	Gold flowering stage	39.369
SRP132670	SRR6706286	Control	3.856
	SRR6706287	Light intensity 50%	4.720
	SRR6706288	Light intensity 20%	3.261
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.201
	CNS0095593	Slightly white alabastrum(diploid) 2	5.468
	CNS0095594	Slightly white alabastrum(diploid) 3	10.094
	CNS0095595	Whole white alabastrum(diploid) 2	4.073
	CNS0095596	Whole white alabastrum(diploid) 3	3.631
	CNS0095597	Whole white alabastrum(diploid) 4	2.464
	CNS0095598	Silvery flower (diploied) 1	23.192
	CNS0095599	Silvery flower (diploied) 2	8.368
	CNS0095600	Silvery flower (diploied) 3	14.918
	CNS0095601	Golden flower (diploid) 1	15.592
	CNS0095602	Golden flower (diploid) 2	18.553
	CNS0095603	Golden flower (diploid) 3	19.960
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.247
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.637
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.939
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.983
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.057
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.907
	CNS0095610	Silvery flower (tetraploid) 1	7.476
	CNS0095611	Silvery flower (tetraploid) 2	10.343
	CNS0095612	Silvery flower (tetraploid) 3	9.585
	CNS0095613	Golden flower (tetraploid) 1	18.544
	CNS0095614	Golden flower (tetraploid) 2	12.504
	CNS0095615	Golden flower (tetraploid) 3	26.898
CRA001975	CRR073297	Stem 1	7.435
	CRR073298	Stem 2	6.203
	CRR073299	Stem 3	7.607
	CRR073300	Leaf 1	2.944
	CRR073301	Leaf 2	5.389
	CRR073302	Leaf 3	2.630
	CRR073303	Juvenile bud 1	1.496
	CRR073304	Juvenile bud 2	1.537
	CRR073305	Juvenile bud 3	1.746
	CRR073306	Third green 1	9.597
	CRR073307	Third green 2	4.459
	CRR073308	Third green 3	7.355
	CRR073309	Second white 1	5.285
	CRR073310	Second white 2	9.035
	CRR073311	Second white 3	9.856
	CRR073312	Silver flowering 1	8.268
	CRR073313	Silver flowering 2	8.016
	CRR073314	Silver flowering 3	3.563
	CRR073315	Gold flowering 1	0.972
	CRR073316	Gold flowering 2	1.265
	CRR073317	Gold flowering 3	0.211
	CRR073318	Tawny withering 1	7.752
	CRR073319	Tawny withering 2	6.366
	CRR073320	Tawny withering 3	6.301