Gene detail

Detail information of GWHGAAZE013392

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AFK41265.1	1.0476E-119	unknown [Lotus japonicus]
Swissprot	tr\|Q9LS01\|AOC3_ARATH	2E-92	Allene oxide cyclase 3, chloroplastic (Precursor)
trEMBL	tr\|I3SLX3\|I3SLX3_LOTJA	4E-120	Uncharacterized protein {ECO:0000313\|EMBL:AFK41265.1}
TAIR10	AT3G25780.1	9E-75	allene oxide cyclase 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	101933649	101934829	-
GWHAAZE00000003	mRNA	101933649	101934829	-
GWHAAZE00000003	exon	101934607	101934829	-
GWHAAZE00000003	exon	101933649	101934172	-
GWHAAZE00000003	CDS	101934607	101934829	-
GWHAAZE00000003	CDS	101933649	101934172	-

Transcript Sequence
>GWHTAAZE013406 ATGGCTTCCACAAGCTCCCTCAAACTAATCTCCTCTTTCAAACACTCCAATCAAGTATTGCCCTTCTCTTCCAAATCCCAAAGTCACACAGCTCACCTGTTTTCAACCCAAAACCTCAAAATCTCAACAATTAATAGAGACTTGAGCACAAGACACTCCAAAAACATCATCACCAAGGCTTTCTTCTTCGATAACTGGTGGAAAGCAAAGCCTTCAACACCCGCAAAAGTTCAAGAACTGTTTGTGTACGAGATGAACGAGCGAGACCGAGGCAGCCCAGCATTCCTAAAACTGAGTCAGAAACCAGTCAACTCCCTCGGGGACCTTGTGCCATTCAGCAACAAGCTCTACAGTGGCGACCTCGAGAAGCGTCTGGGGATCACAGCAGGGATATGTGTGCTGATCCAGAACGTTCCCGAGAAGAAAGGTGACCGCTACGAGGCCATATACAGCTTCTACTTCGGGGATTACGGACACTTGTCGGTCCAAGGAGCGTATTTGACCTACGAGGAGACTCGTCTAGCCGTGACAGGCGGATCAGGGATCTTCCAAGGGGCTTATGGTGAAGTAAAGCTACAGCAGATTGTGTTCCCATTCAAGCTTTTCTATACCTTTTATTTGAAGGGGATTAAGGATCTGCCAAATGACCTTATTTTTAAGCCAGTGACCCCATCACCAGCCGACGAACCCTCACCCGCTGCTAAGGCTACGGAGCCTCATGCCACTATTCCTAATTTTACTAATTGA

Network for GWHGAAZE013392

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF06351.12	Allene_ox_cyc	74	246	1.20E-96

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K10525	AOC	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		alpha-Linolenic acid metabolism	map00592

Gene Ontology

GO term	Ontology	Name
GO:0009695	biological_process	jasmonic acid biosynthetic process
GO:0046423	molecular_function	allene-oxide cyclase activity
GO:0016853	molecular_function	isomerase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	5.325
	SRR3591706	second leaf	2.298
	SRR3591707	mature leaf	11.320
	SRR3591708	Shoot apex	4.177
	SRR3591709	Stem	7.636
	SRR3591710	White floral bud	5.428
	SRR3591711	White flower	19.896
	SRR3591712	Green floral bud	3.274
	SRR3591713	Yellow flower	18.325
SRP173429	SRR8316895	Juvenile bud stage	1.129
	SRR8316896	Juvenile bud stage	2.347
	SRR8316897	Juvenile bud stage	1.360
	SRR8316894	Third green stage	0.109
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	1.753
	SRR8316898	Complete white stage	1.021
	SRR8316899	Complete white stage	1.118
	SRR8316903	Complete white stage	1.443
	SRR8316902	Silver flowering stage	3.436
	SRR8316904	Silver flowering stage	4.933
	SRR8316905	Silver flowering stage	2.437
	SRR8316906	Gold flowering stage	25.072
	SRR8316907	Gold flowering stage	15.908
	SRR8316908	Gold flowering stage	39.915
SRP132670	SRR6706286	Control	3.948
	SRR6706287	Light intensity 50%	2.252
	SRR6706288	Light intensity 20%	1.147
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	10.773
	CNS0095593	Slightly white alabastrum(diploid) 2	2.180
	CNS0095594	Slightly white alabastrum(diploid) 3	5.129
	CNS0095595	Whole white alabastrum(diploid) 2	0.815
	CNS0095596	Whole white alabastrum(diploid) 3	0.393
	CNS0095597	Whole white alabastrum(diploid) 4	0.945
	CNS0095598	Silvery flower (diploied) 1	7.103
	CNS0095599	Silvery flower (diploied) 2	4.967
	CNS0095600	Silvery flower (diploied) 3	5.962
	CNS0095601	Golden flower (diploid) 1	10.874
	CNS0095602	Golden flower (diploid) 2	8.087
	CNS0095603	Golden flower (diploid) 3	5.856
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.733
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.193
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.377
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.488
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.822
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.466
	CNS0095610	Silvery flower (tetraploid) 1	8.606
	CNS0095611	Silvery flower (tetraploid) 2	3.274
	CNS0095612	Silvery flower (tetraploid) 3	9.306
	CNS0095613	Golden flower (tetraploid) 1	23.545
	CNS0095614	Golden flower (tetraploid) 2	31.935
	CNS0095615	Golden flower (tetraploid) 3	2.589
CRA001975	CRR073297	Stem 1	1.179
	CRR073298	Stem 2	0.952
	CRR073299	Stem 3	0.682
	CRR073300	Leaf 1	0.236
	CRR073301	Leaf 2	0.335
	CRR073302	Leaf 3	0.055
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.139
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.564
	CRR073307	Third green 2	0.350
	CRR073308	Third green 3	0.277
	CRR073309	Second white 1	0.460
	CRR073310	Second white 2	2.025
	CRR073311	Second white 3	1.881
	CRR073312	Silver flowering 1	24.971
	CRR073313	Silver flowering 2	19.944
	CRR073314	Silver flowering 3	15.739
	CRR073315	Gold flowering 1	0.061
	CRR073316	Gold flowering 2	0.424
	CRR073317	Gold flowering 3	7.283
	CRR073318	Tawny withering 1	28.008
	CRR073319	Tawny withering 2	77.857
	CRR073320	Tawny withering 3	4.179