Gene detail

Detail information of GWHGAAZE013394

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_011077271.1	PREDICTED: serine/threonine-protein kinase STN7, chloroplastic [Sesamum indicum]
Swissprot	tr\|Q9S713\|STT7_ARATH	Serine/threonine-protein kinase STN7, chloroplastic (Precursor)
trEMBL	tr\|A0A059BFE0\|A0A059BFE0_EUCGR	Uncharacterized protein {ECO:0000313\|EMBL:KCW64769.1}
TAIR10	AT1G68830.1	STT7 homolog STN7

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	101990399	101994483	+
GWHAAZE00000003	mRNA	101990399	101994483	+
GWHAAZE00000003	exon	101990399	101990806	+
GWHAAZE00000003	exon	101990919	101991008	+
GWHAAZE00000003	exon	101991340	101991459	+
GWHAAZE00000003	exon	101991606	101991704	+
GWHAAZE00000003	exon	101992329	101992497	+
GWHAAZE00000003	exon	101992587	101992680	+
GWHAAZE00000003	exon	101992898	101992991	+
GWHAAZE00000003	exon	101993092	101993148	+
GWHAAZE00000003	exon	101993812	101994225	+
GWHAAZE00000003	exon	101994322	101994483	+
GWHAAZE00000003	CDS	101990399	101990806	+
GWHAAZE00000003	CDS	101990919	101991008	+
GWHAAZE00000003	CDS	101991340	101991459	+
GWHAAZE00000003	CDS	101991606	101991704	+
GWHAAZE00000003	CDS	101992329	101992497	+
GWHAAZE00000003	CDS	101992587	101992680	+
GWHAAZE00000003	CDS	101992898	101992991	+
GWHAAZE00000003	CDS	101993092	101993148	+
GWHAAZE00000003	CDS	101993812	101994225	+
GWHAAZE00000003	CDS	101994322	101994483	+

Transcript Sequence
>GWHTAAZE013408 GGAGTTGGGGGACTATGTGGAGTAAAGCTCCATTCCGTCTATTCAAAACCAACAACATCTCCATTTTTAGGCAACAAGCTTAAGCTCAAACCCTTTTGTGGCAAATTCACCGTTTCGAGGTCGAAATCGCATTTAATTTATGCTTCTGGAGTTGCATTGGTTGACATGGTTCACAATATCTTTGTGGGTGTTGGAGTAGGGCTTCCTTGCACTGTAATGGAGTGTGGTGATATAATTTACAGAAGCACATTACCCAGATCAGATGGGCTCACAATTACTGTTCCTGGTGCAATTTTAGCACTCGGCGCGCTTTCTTATCTCTGGGCTACCCCTGGTGTGGCCCCTGGGTTTTGGGATATGTTTGTTCTTGCCTATGTTGAGAGGTTATTCAGACCTACTTATAAAAAGGATGATTTTGTGTTGGGGAAGAAATTGGGTGAGGGAGCTTTTGGTGTGGTTTATAGAGTTTCATTGGCTAATAAGAAGCCCTCTTCAAAGGAAGGTGATTTAGTCTTGAAAAAGGCTACGGAATATGGTGCAGTAGAGATATGGATGAATGAGCGTGTGCGAAGGGCTTGTGCAAGCAGCTGCGCAGATTTTGTGTATGGCTTTCTTGAGAGTTCGTCAAAGAAAGGAGCCGAGTATTGGCTCATATGGCGTTTTGAAGGGGATGTCACACTTGCAGATTTGTTTCAGAGTAAAGAGTTTCCCTACAATGTGGAAGCAATGATTCTTGGAGAGTTCCAGAATTTGCCTAAGGGGTTGGAAAGGGAAAATAGAATCATCCAGACAATAATGAGGCAGCTCTTATTTGCATTGGATGGTATTCACTCGACCGGGATTGTTCATAGAGATATTAAGCCGCAGAACGTTATTTTCTCTGAAGGTTCTCGGACATTCAAGATAATTGATCTTGGAGCTGCAGCTGATTTGCGAGTAGGCATCAATTATATTCCAAAAGAGTTTCTTTTAGATCCAAGATATGCTGCACCAGAGCAATACATTATGAGCACACAAACACCCTCTGCACCATCAGCTCCTGTGGCAGCAGCACTTTCCCCAGTTCTATGGCAGATGAATCTACCTGATAGATTTGACATCTACAGCACTGGCCTCATATTCCTGCAAATGGCGTTCCCATCATTAAGAACCGACAGTGGCCTTATCCAGTTCAACCGTCAGCTAAAGAAATGTGACTACGACTTGGTTGCATGGAGAAAAACCGTAGAGCCTCGTGCCAACTCTGACCTACGGAAGGGCTTTGAGTTATTAGATTTAGACAGTGGAATAGGATGGGAACTACTGACATCAATGGTACGGTACAAAGCAGGTCAACGAACGAGTGCAAAAGCGGCACTAGCCCATCCCTATTTCGACAGAGAAGGCCTATTGGTTTTGTCCTTCACCCAGAAACTTAGGCTTCAGTATTTCCGAGCTACACAGCAGGATTATAGTGAAGCTGCTAACTGGATTATTGAGCTTATGGCTAAATCAGGAACAGAGAAGGAGGGTGGCTTCACCGAAGCACAGCTTCAAAATCTGAGAGAAATAAAGCCGACAAAGAAGGCAAGCGCGAGAAGGAACGCTCTTGCTTCAGTTCTTCGGCTTCAGAGAAAGATTATAAAGACGGTGAATGAGAGCGTGAACGAGATTAATGAACGCAGGAAGAGCTTCTGGTGGAGCAGGTGGATTCCCAAAGAGGAATGA

Network for GWHGAAZE013394

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	141	458	5.20E-22

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	Group-Pl-4

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	53.104
	SRR3591706	second leaf	179.910
	SRR3591707	mature leaf	398.051
	SRR3591708	Shoot apex	64.032
	SRR3591709	Stem	65.049
	SRR3591710	White floral bud	40.250
	SRR3591711	White flower	41.397
	SRR3591712	Green floral bud	41.320
	SRR3591713	Yellow flower	70.612
SRP173429	SRR8316895	Juvenile bud stage	31.974
	SRR8316896	Juvenile bud stage	44.980
	SRR8316897	Juvenile bud stage	22.712
	SRR8316894	Third green stage	25.641
	SRR8316900	Third green stage	69.929
	SRR8316901	Third green stage	61.717
	SRR8316898	Complete white stage	30.303
	SRR8316899	Complete white stage	127.855
	SRR8316903	Complete white stage	40.503
	SRR8316902	Silver flowering stage	19.500
	SRR8316904	Silver flowering stage	28.784
	SRR8316905	Silver flowering stage	15.939
	SRR8316906	Gold flowering stage	34.212
	SRR8316907	Gold flowering stage	29.597
	SRR8316908	Gold flowering stage	37.363
SRP132670	SRR6706286	Control	125.657
	SRR6706287	Light intensity 50%	129.432
	SRR6706288	Light intensity 20%	139.788
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	30.937
	CNS0095593	Slightly white alabastrum(diploid) 2	28.007
	CNS0095594	Slightly white alabastrum(diploid) 3	28.092
	CNS0095595	Whole white alabastrum(diploid) 2	30.033
	CNS0095596	Whole white alabastrum(diploid) 3	28.277
	CNS0095597	Whole white alabastrum(diploid) 4	29.756
	CNS0095598	Silvery flower (diploied) 1	42.719
	CNS0095599	Silvery flower (diploied) 2	37.867
	CNS0095600	Silvery flower (diploied) 3	48.404
	CNS0095601	Golden flower (diploid) 1	54.360
	CNS0095602	Golden flower (diploid) 2	65.337
	CNS0095603	Golden flower (diploid) 3	64.581
	CNS0095604	Slightly white alabastrum(tetraploid) 1	39.340
	CNS0095605	Slightly white alabastrum(tetraploid) 2	29.277
	CNS0095606	Slightly white alabastrum(tetraploid) 3	60.037
	CNS0095607	Whole white alabastrum(tetraploid) 1	27.966
	CNS0095608	Whole white alabastrum(tetraploid) 2	27.099
	CNS0095609	Whole white alabastrum(tetraploid) 3	54.895
	CNS0095610	Silvery flower (tetraploid) 1	82.243
	CNS0095611	Silvery flower (tetraploid) 2	97.929
	CNS0095612	Silvery flower (tetraploid) 3	15.227
	CNS0095613	Golden flower (tetraploid) 1	69.487
	CNS0095614	Golden flower (tetraploid) 2	111.303
	CNS0095615	Golden flower (tetraploid) 3	105.301
CRA001975	CRR073297	Stem 1	23.070
	CRR073298	Stem 2	18.571
	CRR073299	Stem 3	11.525
	CRR073300	Leaf 1	27.993
	CRR073301	Leaf 2	29.811
	CRR073302	Leaf 3	16.109
	CRR073303	Juvenile bud 1	25.392
	CRR073304	Juvenile bud 2	15.003
	CRR073305	Juvenile bud 3	29.675
	CRR073306	Third green 1	18.594
	CRR073307	Third green 2	15.985
	CRR073308	Third green 3	15.038
	CRR073309	Second white 1	3.904
	CRR073310	Second white 2	7.613
	CRR073311	Second white 3	6.806
	CRR073312	Silver flowering 1	7.405
	CRR073313	Silver flowering 2	3.817
	CRR073314	Silver flowering 3	3.352
	CRR073315	Gold flowering 1	68.280
	CRR073316	Gold flowering 2	87.755
	CRR073317	Gold flowering 3	44.659
	CRR073318	Tawny withering 1	3.982
	CRR073319	Tawny withering 2	2.515
	CRR073320	Tawny withering 3	3.300